Wall clock time and date at job start Mon Mar 30 2020 02:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46611 * 2 1 4 4 C 1.50703 * 109.47571 * 240.00357 * 2 1 3 5 5 H 1.08003 * 119.99945 * 239.99900 * 4 2 1 6 6 C 1.37871 * 119.99928 * 59.99208 * 4 2 1 7 7 N 1.31517 * 120.00647 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47095 * 90.00320 * 8 6 4 10 10 H 1.48500 * 109.47549 * 210.00283 * 8 6 4 11 11 H 1.48500 * 109.47304 * 330.00147 * 8 6 4 12 12 N 1.46899 * 109.47344 * 119.99705 * 2 1 3 13 13 C 1.46895 * 111.00203 * 275.00493 * 12 2 1 14 14 C 1.53001 * 119.81164 * 111.02013 * 13 12 2 15 15 C 1.54506 * 122.36832 * 183.40076 * 13 12 2 16 16 H 1.09003 * 122.36429 * 0.02562 * 15 13 12 17 17 C 1.54483 * 104.06360 * 136.78330 * 15 13 12 18 18 O 1.44426 * 104.80284 * 23.97771 * 17 15 13 19 19 C 1.44422 * 105.27439 * 319.49047 * 18 17 15 20 20 H 1.08999 * 109.47223 * 60.00664 * 1 2 3 21 21 H 1.09003 * 109.46611 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47337 * 299.99587 * 1 2 3 23 23 H 0.96997 * 120.00520 * 179.97438 * 7 6 4 24 24 H 1.00904 * 110.99720 * 151.04817 * 12 2 1 25 25 H 1.08992 * 117.43652 * 221.00909 * 14 13 12 26 26 H 1.09001 * 117.42748 * 5.65843 * 14 13 12 27 27 H 1.09005 * 110.37187 * 265.15056 * 17 15 13 28 28 H 1.08996 * 110.37438 * 142.81382 * 17 15 13 29 29 H 1.09008 * 110.37162 * 159.34384 * 19 18 17 30 30 H 1.08999 * 110.37352 * 281.56373 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6035 8 14 2.3215 -1.1202 -4.0079 9 1 1.3430 -2.1616 -4.4119 10 1 2.4867 -0.1413 -5.1123 11 1 3.6295 -1.7581 -3.7122 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2226 2.3469 14 6 1.1133 0.0428 3.5171 15 6 2.6343 -0.2127 3.7228 16 1 3.0049 -1.2204 3.9105 17 6 3.5176 0.9748 4.1657 18 8 2.9939 2.1126 3.4467 19 6 2.6976 1.6216 2.1212 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 0.7094 1.1617 -3.4845 24 1 2.9174 -1.1204 1.0287 25 1 0.6803 0.9428 3.9534 26 1 0.4609 -0.8303 3.4991 27 1 4.5573 0.7977 3.8903 28 1 3.4305 1.1323 5.2407 29 1 1.9805 2.2761 1.6256 30 1 3.6112 1.5456 1.5317 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718095848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:31 Heat of formation + Delta-G solvation = -31.256064 kcal Electronic energy + Delta-G solvation = -12854.422222 eV Core-core repulsion = 10649.884367 eV Total energy + Delta-G solvation = -2204.537855 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.27150 -37.29654 -35.29437 -33.48606 -30.02008 -28.74709 -27.20648 -26.66841 -22.54862 -21.58212 -20.26999 -18.64060 -17.53419 -16.95215 -16.65550 -16.30533 -15.38294 -15.14562 -14.36864 -14.08719 -13.71571 -13.42347 -13.31301 -12.85585 -12.61048 -12.51702 -12.38443 -12.19895 -12.02826 -11.36161 -11.01928 -10.83113 -10.59066 -10.32357 -9.13201 -8.14437 -6.28857 1.41840 1.42801 1.52618 2.39572 2.54369 2.86214 3.14771 3.35625 3.64714 3.84163 3.97963 4.25600 4.43719 4.62992 4.66677 4.75779 4.83656 4.86482 4.97099 5.10340 5.17650 5.23361 5.47128 5.64285 5.72982 5.85040 6.20025 6.40995 6.73587 6.95924 7.41478 8.91054 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059215 B = 0.009140 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.742329 B = 3062.790560 C = 3107.535680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.217 3.783 3 H -0.016 1.016 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.639 5.639 13 C -0.021 4.021 14 C -0.111 4.111 15 C -0.184 4.184 16 H 0.141 0.859 17 C 0.068 3.932 18 O -0.390 6.390 19 C 0.064 3.936 20 H 0.056 0.944 21 H 0.025 0.975 22 H 0.019 0.981 23 H 0.263 0.737 24 H 0.334 0.666 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 -1.399 10.382 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 H 0.001 0.999 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.270 5.270 13 C -0.114 4.114 14 C -0.149 4.149 15 C -0.202 4.202 16 H 0.158 0.842 17 C -0.008 4.008 18 O -0.308 6.308 19 C -0.015 4.015 20 H 0.075 0.925 21 H 0.045 0.955 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.153 0.847 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.092 0.908 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.111 -1.312 10.475 11.006 hybrid contribution 0.858 0.077 -1.526 1.753 sum 3.969 -1.235 8.949 9.867 Atomic orbital electron populations 1.21509 0.97897 0.98671 0.98902 1.18935 0.92620 0.91494 0.86004 0.99851 1.21593 1.31852 1.12803 0.91621 0.92225 1.25712 0.95149 0.95641 1.02002 1.70021 1.37367 1.23957 1.24214 0.85495 0.78867 0.78186 0.78696 1.20200 1.20950 1.19129 1.60415 1.31420 1.30629 1.04532 1.23261 1.06666 0.92600 0.88833 1.23344 0.91262 1.03107 0.97186 1.24779 0.95515 1.01166 0.98765 0.84151 1.23175 0.96343 0.82890 0.98440 1.89094 1.84385 1.33507 1.23800 1.23080 0.98503 0.94881 0.85012 0.92502 0.95542 0.96159 0.92803 0.84705 0.88608 0.87457 0.90376 0.86220 0.90757 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 9.19 71.98 0.66 -4.98 16 2 C 0.22 11.02 2.52 44.17 0.11 11.13 16 3 H -0.02 -0.88 6.06 -2.39 -0.01 -0.90 16 4 C -0.54 -29.46 8.59 25.60 0.22 -29.24 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.43 16 8 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 12 N -0.64 -27.03 6.63 -447.13 -2.96 -30.00 16 13 C -0.02 -0.74 2.91 4.54 0.01 -0.72 16 14 C -0.11 -3.41 10.01 31.49 0.32 -3.10 16 15 C -0.18 -4.98 7.36 -8.88 -0.07 -5.05 16 16 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 17 C 0.07 1.68 7.54 72.49 0.55 2.22 16 18 O -0.39 -12.89 11.34 -148.98 -1.69 -14.58 16 19 C 0.06 2.38 5.94 72.49 0.43 2.81 16 20 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 21 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 23 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 24 H 0.33 13.74 8.31 -89.69 -0.75 13.00 16 25 H 0.10 2.83 8.09 -2.39 -0.02 2.81 16 26 H 0.11 3.22 8.14 -2.39 -0.02 3.21 16 27 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 3.03 7.61 -2.38 -0.02 3.02 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -59.73 248.49 0.68 -59.05 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.38 Total: 18.39 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 2.68 Total: -25.68 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.72 Total: -82.42 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -1.69 Total: -14.58 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -59.73 0.68 -59.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718095848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.798 kcal (2) G-P(sol) polarization free energy of solvation -59.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds