Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47351 * 2 1 4 4 C 1.50706 * 109.46813 * 239.99961 * 2 1 3 5 5 H 1.07992 * 120.00055 * 240.00113 * 4 2 1 6 6 C 1.37875 * 119.99808 * 60.00105 * 4 2 1 7 7 N 1.31518 * 120.00139 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99912 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46907 * 60.00537 * 8 6 4 10 10 H 1.48503 * 109.47350 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47580 * 300.00519 * 8 6 4 12 12 N 1.46899 * 109.47225 * 120.00347 * 2 1 3 13 13 C 1.46903 * 110.99884 * 208.50961 * 12 2 1 14 14 C 1.52993 * 119.80391 * 294.79831 * 13 12 2 15 15 C 1.52998 * 60.65524 * 247.69493 * 14 13 12 16 16 H 1.08992 * 119.81035 * 112.31587 * 15 14 13 17 17 C 1.54483 * 118.06237 * 269.59501 * 15 14 13 18 18 O 1.44425 * 104.80333 * 86.83027 * 17 15 14 19 19 C 1.46775 * 105.41917 * 319.28657 * 18 17 15 20 20 H 1.08991 * 109.47551 * 174.01585 * 1 2 3 21 21 H 1.09001 * 109.47148 * 294.01501 * 1 2 3 22 22 H 1.09004 * 109.47165 * 54.00905 * 1 2 3 23 23 H 0.96999 * 119.99493 * 180.02562 * 7 6 4 24 24 H 1.00903 * 110.99661 * 332.46055 * 12 2 1 25 25 H 1.09006 * 117.43855 * 355.36689 * 14 13 12 26 26 H 1.09006 * 117.43080 * 140.07525 * 14 13 12 27 27 H 1.09000 * 110.37254 * 205.65268 * 17 15 14 28 28 H 1.08992 * 110.37648 * 327.88607 * 17 15 14 29 29 H 1.08991 * 110.29174 * 282.46795 * 19 18 17 30 30 H 1.09005 * 111.53644 * 159.38220 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8276 -2.5197 -4.0082 10 1 1.8266 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0079 12 7 2.0197 -0.6926 1.1994 13 6 3.3314 -0.1730 1.6086 14 6 4.5447 -0.3684 0.6974 15 6 4.4899 -1.0996 2.0403 16 1 4.3918 -2.1849 2.0627 17 6 5.0930 -0.3958 3.2761 18 8 4.0204 0.4195 3.7965 19 6 3.3614 0.9958 2.6183 20 1 -0.3634 -1.0220 -0.1071 21 1 -0.3633 0.4182 0.9387 22 1 -0.3634 0.6039 -0.8315 23 1 0.7088 1.1614 -3.4844 24 1 1.3527 -0.6251 1.9535 25 1 4.4046 -0.9640 -0.2047 26 1 5.2442 0.4628 0.6073 27 1 5.4042 -1.1316 4.0177 28 1 5.9378 0.2275 2.9833 29 1 3.9500 1.8236 2.2231 30 1 2.3480 1.3251 2.8478 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718095849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = -10.782421 kcal Electronic energy + Delta-G solvation = -12901.724480 eV Core-core repulsion = 10698.074428 eV Total energy + Delta-G solvation = -2203.650051 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.68296 -35.57064 -33.59510 -31.72506 -28.66590 -26.85109 -25.37231 -24.69141 -21.00969 -20.00133 -19.10400 -16.34964 -16.02155 -15.21167 -14.82507 -14.62325 -13.75558 -13.49774 -12.92090 -12.66417 -12.24680 -11.87473 -11.40611 -10.94969 -10.76094 -10.71663 -10.52933 -10.26468 -10.00628 -9.83813 -9.61528 -9.26757 -8.91028 -8.40245 -7.29338 -5.99510 -4.01980 3.31883 3.36617 3.39444 4.06767 4.24236 4.42290 4.90497 4.99214 5.20119 5.32599 5.44926 5.49427 5.67414 5.88734 5.97171 6.19008 6.21733 6.50711 6.70460 6.78483 6.90972 6.92691 6.99784 7.43380 7.69876 7.88330 8.24264 8.32616 8.68286 9.02995 9.62067 11.07569 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048507 B = 0.010783 C = 0.009502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.094322 B = 2595.984088 C = 2945.968217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.214 3.786 3 H 0.006 0.994 4 C -0.489 4.489 5 H 0.060 0.940 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.642 5.642 13 C 0.023 3.977 14 C -0.108 4.108 15 C -0.206 4.206 16 H 0.117 0.883 17 C 0.076 3.924 18 O -0.385 6.385 19 C 0.056 3.944 20 H 0.037 0.963 21 H 0.006 0.994 22 H 0.087 0.913 23 H 0.260 0.740 24 H 0.324 0.676 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 -0.620 7.030 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.528 4.528 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.271 5.271 13 C -0.071 4.071 14 C -0.146 4.146 15 C -0.225 4.225 16 H 0.135 0.865 17 C 0.000 4.000 18 O -0.304 6.304 19 C -0.023 4.023 20 H 0.056 0.944 21 H 0.025 0.975 22 H 0.105 0.895 23 H 0.070 0.930 24 H 0.142 0.858 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.504 -0.999 6.743 8.761 hybrid contribution -0.014 0.338 -0.778 0.849 sum 5.490 -0.660 5.965 8.133 Atomic orbital electron populations 1.21989 0.98220 1.00730 0.99214 1.19165 0.91219 0.92377 0.86451 0.97656 1.21093 1.30422 1.11869 0.89445 0.92135 1.24951 0.95451 0.95167 0.98970 1.69882 1.37280 1.23121 1.23419 0.86617 0.79077 0.79746 0.82269 1.20349 1.21459 1.20369 1.60357 1.00856 1.58175 1.07699 1.22993 0.89395 0.93775 1.00942 1.23135 0.96299 1.01094 0.94039 1.24342 1.03803 0.99319 0.95047 0.86471 1.22792 0.89632 0.93093 0.94521 1.89453 1.46643 1.64945 1.29366 1.23815 0.98169 0.95084 0.85224 0.94427 0.97541 0.89469 0.93032 0.85834 0.86238 0.89887 0.89301 0.92709 0.91940 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.90 37.16 0.33 -3.09 16 2 C 0.21 5.30 2.55 -68.86 -0.18 5.13 16 3 H 0.01 0.15 7.81 -51.93 -0.41 -0.25 16 4 C -0.49 -13.19 7.60 -34.44 -0.26 -13.45 16 5 H 0.06 1.65 6.96 -52.49 -0.37 1.29 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.33 11.39 55.43 0.63 -24.70 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.64 -13.80 6.62 -92.68 -0.61 -14.41 16 13 C 0.02 0.44 2.55 -130.04 -0.33 0.11 16 14 C -0.11 -1.99 9.39 -26.74 -0.25 -2.24 16 15 C -0.21 -3.43 7.21 -89.05 -0.64 -4.07 16 16 H 0.12 1.94 8.14 -51.93 -0.42 1.51 16 17 C 0.08 1.12 7.45 37.94 0.28 1.40 16 18 O -0.39 -6.59 11.72 -35.23 -0.41 -7.00 16 19 C 0.06 0.96 7.46 37.93 0.28 1.24 16 20 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.01 0.12 8.00 -51.93 -0.42 -0.30 16 22 H 0.09 2.28 6.26 -51.93 -0.32 1.95 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.32 6.48 8.17 -39.29 -0.32 6.16 16 25 H 0.12 2.46 6.50 -51.93 -0.34 2.12 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.53 8.10 -51.93 -0.42 1.11 16 LS Contribution 247.94 15.07 3.74 3.74 Total: -1.00 -28.34 247.94 -6.80 -35.14 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.26 Total: 4.60 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.86 Total: -13.57 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.02 Total: -39.12 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.41 Total: -7.00 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.34 -6.80 -35.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718095849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.354 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds