Wall clock time and date at job start Mon Mar 30 2020 02:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47718 * 2 1 4 4 C 1.50706 * 109.46875 * 240.00394 * 2 1 3 5 5 H 1.07995 * 119.99876 * 274.70518 * 4 2 1 6 6 C 1.37873 * 119.99950 * 94.70744 * 4 2 1 7 7 N 1.31510 * 120.00246 * 174.46069 * 6 4 2 8 8 Si 1.86803 * 120.00212 * 354.45856 * 6 4 2 9 9 H 1.48499 * 109.47140 * 94.10999 * 8 6 4 10 10 H 1.48490 * 109.47333 * 214.11590 * 8 6 4 11 11 H 1.48499 * 109.46899 * 334.11678 * 8 6 4 12 12 N 1.46898 * 109.47206 * 120.00965 * 2 1 3 13 13 C 1.50322 * 111.30983 * 188.48589 * 12 2 1 14 14 C 1.56007 * 105.21333 * 121.91817 * 13 12 2 15 15 H 1.09000 * 116.13067 * 159.96908 * 14 13 12 16 16 C 1.57073 * 99.74051 * 33.25578 * 14 13 12 17 17 C 1.49794 * 110.99688 * 304.64716 * 12 2 1 18 18 H 1.08999 * 116.41212 * 74.97148 * 17 12 2 19 19 C 1.56102 * 103.75978 * 305.52630 * 17 12 2 20 20 O 1.44119 * 105.40000 * 287.63065 * 19 17 12 21 21 H 1.08994 * 109.47005 * 185.96806 * 1 2 3 22 22 H 1.09001 * 109.46378 * 305.96357 * 1 2 3 23 23 H 1.09001 * 109.46868 * 65.96004 * 1 2 3 24 24 H 0.97006 * 120.00557 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.91894 * 3.13036 * 13 12 2 26 26 H 1.08998 * 110.53875 * 241.02707 * 13 12 2 27 27 H 1.08997 * 112.44426 * 191.26349 * 16 14 13 28 28 H 1.09000 * 112.44725 * 63.59676 * 16 14 13 29 29 H 1.09000 * 110.25808 * 46.60896 * 19 17 12 30 30 H 1.08994 * 110.26345 * 168.55805 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1399 -1.7849 -1.2276 6 6 2.3544 0.0116 -2.3601 7 7 2.8947 -0.5932 -3.3953 8 14 2.0234 1.8491 -2.4201 9 1 3.2454 2.5859 -2.0089 10 1 1.6516 2.2402 -3.8035 11 1 0.9101 2.1820 -1.4955 12 7 2.0197 -0.6927 1.1993 13 6 3.5077 -0.5404 1.3488 14 6 3.7126 0.1297 2.7427 15 1 4.7025 0.0224 3.1860 16 6 2.5078 -0.5074 3.5235 17 6 1.4490 -0.0821 2.4424 18 1 0.4056 -0.3105 2.6599 19 6 1.8212 1.4288 2.3185 20 8 3.2413 1.4938 2.5557 21 1 -0.3633 -1.0220 0.1068 22 1 -0.3632 0.6035 0.8318 23 1 -0.3633 0.4187 -0.9386 24 1 3.1210 -0.0854 -4.1902 25 1 3.8964 0.1021 0.5588 26 1 3.9964 -1.5143 1.3212 27 1 2.3354 -0.0269 4.4866 28 1 2.5972 -1.5898 3.6154 29 1 1.5885 1.7941 1.3183 30 1 1.2852 2.0123 3.0670 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718288625.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:29 Heat of formation + Delta-G solvation = -5.937710 kcal Electronic energy + Delta-G solvation = -13461.695485 eV Core-core repulsion = 11258.255517 eV Total energy + Delta-G solvation = -2203.439969 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.56108 -35.19359 -32.70178 -31.26319 -29.38496 -27.80018 -25.14136 -24.17367 -21.07971 -20.74948 -18.46902 -17.10472 -16.48416 -15.83616 -14.91467 -14.43367 -13.72831 -12.89992 -12.55900 -12.25918 -12.13511 -11.98498 -11.71943 -11.42058 -11.17976 -10.92912 -10.78522 -10.58363 -10.55768 -10.00655 -9.72043 -9.30982 -8.89269 -8.56901 -7.36300 -6.10459 -4.08650 3.25146 3.34108 3.35714 4.07273 4.38192 4.64407 4.70698 4.96927 5.22767 5.24709 5.31201 5.64712 5.90141 5.98246 6.03216 6.10839 6.14081 6.29200 6.47148 6.52921 6.58653 6.69648 6.82115 7.06967 7.15787 7.52067 7.85575 7.90470 8.62077 9.01826 9.53503 11.02596 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045022 B = 0.013897 C = 0.013751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.765290 B = 2014.390303 C = 2035.694039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.014 0.986 4 C -0.499 4.499 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.866 3.134 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.495 5.495 13 C 0.023 3.977 14 C 0.043 3.957 15 H 0.132 0.868 16 C -0.153 4.153 17 C 0.023 3.977 18 H 0.121 0.879 19 C 0.004 3.996 20 O -0.384 6.384 21 H 0.054 0.946 22 H 0.020 0.980 23 H 0.050 0.950 24 H 0.264 0.736 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 2.490 11.653 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.057 3.943 3 H 0.031 0.969 4 C -0.537 4.537 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.693 3.307 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.220 5.220 13 C -0.105 4.105 14 C -0.014 4.014 15 H 0.149 0.851 16 C -0.191 4.191 17 C -0.085 4.085 18 H 0.139 0.861 19 C -0.074 4.074 20 O -0.303 6.303 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.498 2.155 11.352 11.651 hybrid contribution -0.080 1.757 -0.240 1.775 sum -1.578 3.912 11.111 11.885 Atomic orbital electron populations 1.22037 0.97970 1.00477 0.99044 1.20039 0.92140 0.92875 0.89230 0.96867 1.20846 1.42981 0.95936 0.93987 0.90217 1.24982 0.94301 0.97827 0.95851 1.69898 1.41838 1.36306 1.05323 0.87027 0.79394 0.86700 0.77541 1.20335 1.21173 1.18776 1.65995 1.03560 1.51823 1.00639 1.24017 0.90641 1.00636 0.95207 1.25127 0.97909 0.81986 0.96413 0.85087 1.24227 0.95598 1.01888 0.97393 1.25011 0.99330 0.91334 0.92859 0.86079 1.24354 0.82471 0.98846 1.01700 1.88988 1.21720 1.26829 1.92794 0.92706 0.96054 0.93067 0.92622 0.90994 0.90375 0.90560 0.89149 0.90002 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.35 37.16 0.31 -2.60 16 2 C 0.16 3.88 0.70 -68.86 -0.05 3.83 16 3 H 0.01 0.34 3.25 -51.93 -0.17 0.17 16 4 C -0.50 -13.99 8.41 -34.44 -0.29 -14.28 16 5 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 8 Si 0.87 21.61 26.51 -169.99 -4.51 17.11 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.26 -6.24 6.18 56.52 0.35 -5.89 16 12 N -0.50 -10.39 5.21 -208.30 -1.08 -11.48 16 13 C 0.02 0.46 5.88 -0.29 0.00 0.46 16 14 C 0.04 0.71 5.95 -22.91 -0.14 0.57 16 15 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 16 C -0.15 -2.22 6.88 -22.25 -0.15 -2.37 16 17 C 0.02 0.40 4.13 -62.16 -0.26 0.14 16 18 H 0.12 1.85 7.67 -51.93 -0.40 1.46 16 19 C 0.00 0.07 6.51 38.82 0.25 0.33 16 20 O -0.38 -7.30 11.24 -35.23 -0.40 -7.69 16 21 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.02 0.38 6.73 -51.93 -0.35 0.03 16 23 H 0.05 1.12 7.22 -51.93 -0.37 0.74 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.07 1.66 7.40 -51.93 -0.38 1.27 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.66 5.06 -51.93 -0.26 1.39 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 232.12 15.07 3.50 3.50 Total: -1.00 -30.61 232.12 -6.22 -36.83 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.08 Total: 0.18 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.42 Total: -11.93 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.31 Total: -37.99 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.40 Total: -7.69 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.51 Total: 17.11 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.61 -6.22 -36.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718288625.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.891 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds