Wall clock time and date at job start Mon Mar 30 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48504 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47210 * 299.99825 * 3 2 1 6 6 H 1.48504 * 109.47044 * 60.00104 * 3 2 1 7 7 C 1.37874 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00135 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47425 * 180.02562 * 9 7 2 11 11 C 1.37485 * 120.00345 * 180.02562 * 10 9 7 12 12 N 1.29585 * 119.84170 * 359.72060 * 11 10 9 13 13 C 1.47500 * 119.87090 * 175.55197 * 12 11 10 14 14 C 1.52434 * 109.77814 * 71.01942 * 13 12 11 15 15 C 1.52700 * 110.81724 * 274.54655 * 14 13 12 16 16 C 1.51463 * 112.34080 * 66.90004 * 15 14 13 17 17 N 1.37388 * 119.84776 * 179.44582 * 11 10 9 18 18 H 0.97007 * 119.99804 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47083 * 59.99436 * 9 7 2 20 20 H 1.09001 * 109.46875 * 299.99700 * 9 7 2 21 21 H 0.97005 * 119.99891 * 359.72072 * 10 9 7 22 22 H 1.09003 * 109.41296 * 191.11123 * 13 12 11 23 23 H 1.08995 * 109.42333 * 310.92121 * 13 12 11 24 24 H 1.08995 * 109.21103 * 34.89708 * 14 13 12 25 25 H 1.09006 * 109.20523 * 154.24920 * 14 13 12 26 26 H 1.09007 * 108.90853 * 187.63097 * 15 14 13 27 27 H 1.09000 * 108.91126 * 306.16134 * 15 14 13 28 28 H 1.08996 * 109.37564 * 57.97014 * 16 15 14 29 29 H 1.09003 * 109.37319 * 177.74057 * 16 15 14 30 30 H 0.96998 * 120.89507 * 290.98119 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7446 -4.9089 0.0015 12 7 0.4700 -5.1422 0.0056 13 6 -0.0234 -6.5286 -0.0940 14 6 0.2673 -7.2740 1.2036 15 6 1.6784 -7.8573 1.1899 16 6 2.7457 -6.7827 1.2049 17 7 2.6402 -5.9507 -0.0089 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5570 -0.8896 20 1 0.6240 -2.5566 0.8903 21 1 3.1566 -3.4354 -0.0017 22 1 -1.0986 -6.5186 -0.2731 23 1 0.4762 -7.0327 -0.9212 24 1 0.1723 -6.5844 2.0423 25 1 -0.4535 -8.0832 1.3215 26 1 1.8060 -8.4939 2.0655 27 1 1.8010 -8.4644 0.2930 28 1 2.6160 -6.1565 2.0875 29 1 3.7297 -7.2508 1.2349 30 1 3.1846 -6.1318 -0.7910 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849216260.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:06 Heat of formation + Delta-G solvation = 4.320416 kcal Electronic energy + Delta-G solvation = -12493.850287 eV Core-core repulsion = 10323.147895 eV Total energy + Delta-G solvation = -2170.702392 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04956 -36.83156 -34.82409 -34.02342 -32.80690 -28.84964 -27.86554 -25.31175 -24.06631 -21.64704 -20.04608 -19.33029 -17.86727 -17.24018 -16.53742 -15.99673 -15.36730 -14.98992 -14.69759 -14.44038 -14.08420 -13.79658 -13.27682 -12.87845 -12.78454 -12.69574 -12.17418 -11.79175 -11.58519 -11.38293 -11.33660 -10.61597 -10.09881 -9.23896 -8.65533 -8.23067 -6.38353 1.43437 1.44795 1.57895 1.84670 2.30061 2.48533 3.10874 3.30915 3.88998 4.14583 4.27303 4.46301 4.66596 4.69012 4.74784 4.96775 5.09643 5.14370 5.23409 5.31152 5.42059 5.47278 5.63225 5.93137 6.13454 6.39910 6.79250 6.84959 7.20695 7.32680 7.97343 8.88841 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071136 B = 0.007577 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.519935 B = 3694.303334 C = 3943.875440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.298 3.702 10 N -0.714 5.714 11 C 0.610 3.390 12 N -0.676 5.676 13 C 0.079 3.921 14 C -0.127 4.127 15 C -0.135 4.135 16 C 0.140 3.860 17 N -0.802 5.802 18 H 0.267 0.733 19 H -0.017 1.017 20 H -0.018 1.018 21 H 0.400 0.600 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 -13.655 1.551 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.093 0.907 9 C 0.174 3.826 10 N -0.354 5.354 11 C 0.244 3.756 12 N -0.415 5.415 13 C -0.051 4.051 14 C -0.165 4.165 15 C -0.174 4.174 16 C 0.015 3.985 17 N -0.457 5.457 18 H 0.076 0.924 19 H 0.001 0.999 20 H 0.000 1.000 21 H 0.235 0.765 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.958 -13.108 1.754 14.505 hybrid contribution 0.870 0.417 -0.351 1.026 sum 6.827 -12.690 1.403 14.479 Atomic orbital electron populations 1.70153 1.08086 1.28210 1.50337 1.25997 0.95764 1.03602 0.94123 0.85173 0.78940 0.77710 0.77727 1.18096 1.20346 1.20392 1.21726 0.94040 0.91350 1.52371 0.90745 1.18219 0.87788 0.82979 0.93617 1.44960 1.09232 1.02558 1.78621 1.18976 0.86008 0.81953 0.88627 1.72657 1.12404 1.22203 1.34213 1.21744 0.98948 0.87373 0.97067 1.21661 0.98593 0.99376 0.96894 1.21726 0.93808 0.98394 1.03435 1.21155 0.99834 0.91625 0.85899 1.44826 1.49826 1.32348 1.18730 0.92409 0.99871 0.99981 0.76455 0.92266 0.93692 0.94456 0.90098 0.89282 0.90930 0.94042 0.87561 0.75795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.25 5.46 84.65 0.46 0.72 16 3 Si 0.98 43.69 29.54 68.60 2.03 45.71 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.56 -31.58 9.28 25.60 0.24 -31.34 16 8 H 0.07 3.91 7.60 -2.91 -0.02 3.89 16 9 C 0.30 16.88 5.41 85.63 0.46 17.34 16 10 N -0.71 -32.06 5.66 -353.80 -2.00 -34.06 16 11 C 0.61 24.56 7.69 260.91 2.01 26.57 16 12 N -0.68 -30.10 9.85 -348.72 -3.43 -33.53 16 13 C 0.08 2.74 6.38 86.00 0.55 3.29 16 14 C -0.13 -3.49 5.74 30.31 0.17 -3.31 16 15 C -0.13 -2.79 5.63 29.99 0.17 -2.62 16 16 C 0.14 3.18 6.57 85.68 0.56 3.74 16 17 N -0.80 -22.81 5.04 -350.29 -1.76 -24.58 16 18 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 19 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 20 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 21 H 0.40 15.94 8.44 -92.70 -0.78 15.16 16 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.04 1.44 7.69 -2.39 -0.02 1.42 16 24 H 0.04 1.21 8.08 -2.39 -0.02 1.19 16 25 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.09 1.41 8.14 -2.38 -0.02 1.40 16 27 H 0.07 1.36 8.01 -2.39 -0.02 1.34 16 28 H 0.04 1.12 8.05 -2.39 -0.02 1.10 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.40 9.65 8.96 -92.71 -0.83 8.82 16 Total: -1.00 -69.00 250.85 -0.74 -69.74 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.48 Total: 19.33 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 4.63 Total: 14.39 kcal Atomic # 7 Polarization: -142.25 SS G_CDS: -6.92 Total: -149.17 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -69.00 -0.74 -69.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849216260.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.064 kcal (2) G-P(sol) polarization free energy of solvation -69.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds