Wall clock time and date at job start Mon Mar 30 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.43755 * 2 1 4 4 C 1.54375 * 110.62307 * 237.47807 * 2 1 3 5 5 C 1.51833 * 105.31268 * 218.17260 * 4 2 1 6 6 O 1.20763 * 127.13278 * 179.56962 * 5 4 2 7 7 C 1.51947 * 105.73681 * 359.30047 * 5 4 2 8 8 N 1.48547 * 104.88775 * 24.29903 * 7 5 4 9 9 C 1.46900 * 111.00162 * 201.50899 * 8 7 5 10 10 C 1.53000 * 109.47016 * 290.12294 * 9 8 7 11 11 C 1.50698 * 109.47291 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99722 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00474 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99612 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47148 * 90.00199 * 15 13 11 17 17 H 1.48505 * 109.46789 * 209.99827 * 15 13 11 18 18 H 1.48494 * 109.46947 * 329.99927 * 15 13 11 19 19 H 1.09012 * 109.46891 * 297.43303 * 1 2 3 20 20 H 1.08997 * 109.47694 * 57.43270 * 1 2 3 21 21 H 1.08998 * 109.47212 * 177.43925 * 1 2 3 22 22 H 1.09007 * 110.37365 * 99.15941 * 4 2 1 23 23 H 1.08999 * 110.18228 * 337.08514 * 4 2 1 24 24 H 1.09004 * 110.35361 * 143.14773 * 7 5 4 25 25 H 1.09000 * 110.35698 * 265.33883 * 7 5 4 26 26 H 1.08997 * 109.46958 * 50.12510 * 9 8 7 27 27 H 1.09002 * 109.47137 * 170.12273 * 9 8 7 28 28 H 1.08998 * 109.46914 * 299.99972 * 10 9 8 29 29 H 1.09002 * 109.47185 * 60.00008 * 10 9 8 30 30 H 0.97001 * 120.00647 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0737 -0.7768 -1.2183 5 6 3.2925 -1.5237 -0.7062 6 8 4.0134 -2.2605 -1.3352 7 6 3.4209 -1.1465 0.7601 8 7 2.0505 -0.7495 1.1736 9 6 2.0876 0.1037 2.3688 10 6 2.5147 -0.7307 3.5780 11 6 2.5534 0.1446 4.8041 12 1 2.2984 1.1913 4.7285 13 6 2.9133 -0.3911 6.0224 14 7 3.2233 -1.6658 6.1146 15 14 2.9606 0.6939 7.5424 16 1 1.6323 0.6742 8.2061 17 1 3.9913 0.1845 8.4823 18 1 3.2957 2.0855 7.1469 19 1 -0.3633 0.4735 0.9122 20 1 -0.3634 0.5531 -0.8660 21 1 -0.3633 -1.0266 -0.0459 22 1 2.3597 -0.0863 -2.0118 23 1 1.3243 -1.4803 -1.5807 24 1 3.7599 -2.0026 1.3435 25 1 4.1112 -0.3111 0.8777 26 1 2.8014 0.9131 2.2154 27 1 1.0970 0.5220 2.5476 28 1 1.8009 -1.5401 3.7313 29 1 3.5053 -1.1490 3.3992 30 1 3.4762 -2.0427 6.9718 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282502.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:03 Heat of formation + Delta-G solvation = -63.521875 kcal Electronic energy + Delta-G solvation = -12440.421179 eV Core-core repulsion = 10234.484174 eV Total energy + Delta-G solvation = -2205.937005 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04552 -38.74779 -35.53948 -33.46792 -31.47971 -29.80815 -26.98031 -25.76008 -22.57492 -21.35818 -20.78369 -18.53133 -17.27643 -16.93893 -16.51552 -16.07745 -15.48362 -15.29791 -14.65023 -14.48931 -13.93605 -13.84857 -13.30396 -13.07671 -12.84147 -12.67729 -12.38142 -12.23705 -12.13620 -11.69154 -11.34619 -11.21516 -10.59197 -10.54721 -9.49811 -8.19644 -6.31297 0.78364 1.41228 1.42562 1.53362 2.40444 2.90658 3.14103 3.17571 3.54445 3.76732 4.12450 4.30055 4.46638 4.49804 4.57136 4.66236 4.80261 4.88139 4.98013 5.05716 5.12468 5.43175 5.46826 5.57083 5.77805 5.89060 6.08226 6.27239 6.35986 6.86648 7.38316 8.92406 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052872 B = 0.007869 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.454784 B = 3557.389694 C = 3915.412068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.052 3.948 3 H 0.070 0.930 4 C -0.164 4.164 5 C 0.382 3.618 6 O -0.479 6.479 7 C -0.028 4.028 8 N -0.512 5.512 9 C 0.071 3.929 10 C 0.034 3.966 11 C -0.543 4.543 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.261 1.261 19 H 0.049 0.951 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.133 0.867 23 H 0.121 0.879 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.033 0.967 27 H 0.075 0.925 28 H -0.009 1.009 29 H -0.010 1.010 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 5.743 -12.537 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.055 4.055 3 H 0.088 0.912 4 C -0.201 4.201 5 C 0.259 3.741 6 O -0.354 6.354 7 C -0.157 4.157 8 N -0.238 5.238 9 C -0.057 4.057 10 C -0.004 4.004 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.185 1.185 19 H 0.068 0.932 20 H 0.107 0.893 21 H 0.077 0.923 22 H 0.150 0.850 23 H 0.139 0.861 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.009 0.991 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.133 4.779 -12.616 14.109 hybrid contribution 0.779 0.738 1.171 1.588 sum -3.355 5.517 -11.444 13.140 Atomic orbital electron populations 1.21704 0.92006 1.02679 1.02534 1.22806 0.97821 0.96341 0.88569 0.91171 1.22929 0.96771 1.01104 0.99325 1.25165 0.83589 0.75850 0.89516 1.90398 1.47108 1.31804 1.66044 1.23564 0.93236 1.02726 0.96160 1.65593 1.16063 1.38318 1.03835 1.22185 1.00534 0.93674 0.89299 1.18913 0.94570 0.94804 0.92103 1.21638 1.45889 0.96486 0.94146 0.91783 1.25982 0.94791 0.96371 1.02694 1.70113 1.47128 1.13954 1.26095 0.85433 0.78007 0.79058 0.78452 1.19738 1.21005 1.18524 0.93189 0.89313 0.92279 0.84962 0.86102 0.89896 0.89586 0.94901 0.90699 0.99007 0.99130 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.39 71.98 0.68 -2.01 16 2 C 0.05 1.23 2.90 45.04 0.13 1.36 16 3 H 0.07 1.51 7.98 -2.39 -0.02 1.50 16 4 C -0.16 -3.31 6.46 30.68 0.20 -3.11 16 5 C 0.38 11.04 8.08 29.86 0.24 11.28 16 6 O -0.48 -16.57 17.99 -1.46 -0.03 -16.60 16 7 C -0.03 -0.93 5.62 85.64 0.48 -0.45 16 8 N -0.51 -17.29 5.09 -861.38 -4.38 -21.67 16 9 C 0.07 2.80 4.69 86.30 0.40 3.21 16 10 C 0.03 1.76 5.03 29.85 0.15 1.91 16 11 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 12 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 14 N -0.93 -57.14 13.29 21.44 0.28 -56.86 16 15 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H 0.05 1.15 7.41 -2.38 -0.02 1.13 16 20 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 22 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 23 H 0.12 2.16 7.81 -2.39 -0.02 2.14 16 24 H 0.08 3.18 7.78 -2.39 -0.02 3.16 16 25 H 0.09 2.71 7.81 -2.39 -0.02 2.69 16 26 H 0.03 1.25 7.88 -2.39 -0.02 1.23 16 27 H 0.07 2.86 7.36 -2.39 -0.02 2.84 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H -0.01 -0.55 7.27 -2.39 -0.02 -0.57 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -66.90 253.84 1.98 -64.91 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 1.10 Total: 1.92 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 2.98 Total: -17.61 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -4.10 Total: -78.53 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.03 Total: -16.60 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.90 1.98 -64.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282502.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.392 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds