Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.80636 * 2 1 4 4 C 1.54915 * 110.74624 * 123.30622 * 2 1 3 5 5 C 1.52176 * 103.16555 * 155.43135 * 4 2 1 6 6 O 1.20761 * 127.08826 * 157.89206 * 5 4 2 7 7 C 1.51561 * 105.82281 * 337.89728 * 5 4 2 8 8 N 1.47900 * 107.37451 * 359.08312 * 7 5 4 9 9 C 1.46896 * 110.99704 * 145.07957 * 8 7 5 10 10 C 1.53002 * 109.47246 * 53.18990 * 9 8 7 11 11 C 1.50706 * 109.46931 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 18 18 H 1.48498 * 109.47295 * 60.00420 * 15 13 11 19 19 H 1.08998 * 109.46685 * 183.29706 * 1 2 3 20 20 H 1.08997 * 109.47001 * 303.29933 * 1 2 3 21 21 H 1.08996 * 109.47111 * 63.30174 * 1 2 3 22 22 H 1.09000 * 110.67816 * 273.85498 * 4 2 1 23 23 H 1.09008 * 110.67814 * 37.01609 * 4 2 1 24 24 H 1.08995 * 109.86345 * 239.63664 * 7 5 4 25 25 H 1.08997 * 109.86549 * 118.53348 * 7 5 4 26 26 H 1.09004 * 109.47535 * 293.19137 * 9 8 7 27 27 H 1.09004 * 109.47041 * 173.19177 * 9 8 7 28 28 H 1.09000 * 109.46986 * 60.00111 * 10 9 8 29 29 H 1.08992 * 109.46974 * 300.00175 * 10 9 8 30 30 H 0.97000 * 119.99706 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0788 -0.7955 1.2108 5 6 3.4618 -1.2263 0.7444 6 8 4.3996 -1.5391 1.4380 7 6 3.4197 -1.1816 -0.7700 8 7 2.0564 -0.7631 -1.1618 9 6 2.0890 0.0726 -2.3694 10 6 2.8597 -0.6552 -3.4727 11 6 2.8926 0.2019 -4.7118 12 1 2.4122 1.1692 -4.7123 13 6 3.5360 -0.2489 -5.8449 14 7 4.1205 -1.4270 -5.8445 15 14 3.5773 0.8139 -7.3806 16 1 4.3242 0.1069 -8.4518 17 1 2.1892 1.0781 -7.8374 18 1 4.2510 2.1012 -7.0737 19 1 -0.3632 -1.0260 0.0591 20 1 -0.3633 0.5642 0.8589 21 1 -0.3633 0.4617 -0.9181 22 1 2.1510 -0.1561 2.0906 23 1 1.4536 -1.6647 1.4155 24 1 3.6347 -2.1701 -1.1757 25 1 4.1491 -0.4609 -1.1397 26 1 2.5830 1.0178 -2.1441 27 1 1.0701 0.2661 -2.7050 28 1 2.3657 -1.6004 -3.6981 29 1 3.8785 -0.8487 -3.1372 30 1 4.0993 -1.9786 -5.0470 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282503.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = -46.016583 kcal Electronic energy + Delta-G solvation = -12505.958131 eV Core-core repulsion = 10300.780212 eV Total energy + Delta-G solvation = -2205.177919 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.89920 -37.51425 -33.95706 -31.89598 -30.15414 -27.95443 -25.76980 -23.70351 -21.25193 -20.31078 -19.40680 -16.82445 -16.28715 -15.72829 -14.75474 -14.25831 -14.14100 -13.81013 -13.68160 -13.10939 -12.37774 -12.18752 -12.06769 -11.92612 -11.35409 -11.31720 -11.05413 -10.81161 -10.18713 -10.12717 -9.77126 -9.41750 -8.63175 -8.37282 -8.15572 -6.39466 -4.09180 1.92133 3.42184 3.44009 3.62904 4.10615 4.18146 4.53333 4.61836 4.79208 5.10975 5.38330 5.42393 5.53473 5.64142 5.69531 5.78533 5.93973 6.00784 6.08601 6.13769 6.29840 6.67585 7.03469 7.11181 7.39214 7.51276 7.57114 8.17016 8.41909 8.84480 9.63244 11.01507 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050779 B = 0.008134 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.276887 B = 3441.424494 C = 3834.452503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 H 0.057 0.943 4 C -0.179 4.179 5 C 0.366 3.634 6 O -0.449 6.449 7 C -0.020 4.020 8 N -0.504 5.504 9 C 0.060 3.940 10 C 0.009 3.991 11 C -0.605 4.605 12 H 0.048 0.952 13 C 0.016 3.984 14 N -0.910 5.910 15 Si 1.069 2.931 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.288 1.288 19 H 0.064 0.936 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.017 0.983 29 H 0.009 0.991 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 2.804 11.124 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.051 4.051 3 H 0.075 0.925 4 C -0.216 4.216 5 C 0.241 3.759 6 O -0.321 6.321 7 C -0.148 4.148 8 N -0.230 5.230 9 C -0.067 4.067 10 C -0.028 4.028 11 C -0.644 4.644 12 H 0.067 0.933 13 C -0.188 4.188 14 N -0.546 5.546 15 Si 0.897 3.103 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.215 1.215 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.111 0.889 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.102 0.898 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.027 0.973 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.046 2.247 9.795 11.245 hybrid contribution -0.136 0.737 1.618 1.783 sum -5.181 2.984 11.413 12.884 Atomic orbital electron populations 1.21635 0.93154 1.02504 1.01689 1.22774 0.96852 0.95684 0.89781 0.92469 1.23159 0.96743 1.02416 0.99329 1.25239 0.88281 0.70296 0.92062 1.90406 1.39969 1.37435 1.64328 1.23296 0.93288 1.04450 0.93782 1.65126 1.16801 1.37849 1.03241 1.22429 1.01292 0.93806 0.89206 1.19319 0.94307 0.96424 0.92785 1.21977 1.39240 1.04847 0.98339 0.93337 1.25844 0.93294 0.97849 1.01814 1.70782 1.41498 1.10136 1.32210 0.83542 0.76401 0.74874 0.75467 1.20711 1.21389 1.21494 0.91742 0.92484 0.92032 0.88902 0.87085 0.86983 0.89810 0.95518 0.91006 0.96447 0.97308 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.53 37.16 0.35 -1.16 16 2 C 0.06 0.77 2.94 -65.74 -0.19 0.57 16 3 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 4 C -0.18 -2.13 6.40 -26.14 -0.17 -2.30 16 5 C 0.37 5.55 8.01 -27.88 -0.22 5.32 16 6 O -0.45 -7.93 17.99 6.00 0.11 -7.82 16 7 C -0.02 -0.33 5.24 -4.00 -0.02 -0.35 16 8 N -0.50 -8.58 5.12 -224.09 -1.15 -9.73 16 9 C 0.06 1.20 4.79 -3.83 -0.02 1.19 16 10 C 0.01 0.22 4.04 -27.88 -0.11 0.11 16 11 C -0.61 -17.05 9.11 -34.44 -0.31 -17.37 16 12 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 13 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 14 N -0.91 -27.85 13.65 55.43 0.76 -27.09 16 15 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.76 7.74 -51.93 -0.40 0.36 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.11 1.19 8.01 -51.92 -0.42 0.78 16 24 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 25 H 0.08 1.50 7.12 -51.93 -0.37 1.13 16 26 H 0.03 0.54 7.89 -51.93 -0.41 0.13 16 27 H 0.07 1.44 7.77 -51.93 -0.40 1.04 16 28 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 29 H 0.01 0.23 6.50 -51.93 -0.34 -0.11 16 30 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 LS Contribution 251.87 15.07 3.80 3.80 Total: -1.00 -31.03 251.87 -6.71 -37.73 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.35 Total: -3.35 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.79 Total: -13.61 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.39 Total: -36.82 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.11 Total: -7.82 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.03 -6.71 -37.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282503.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.282 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds