Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.80636 * 2 1 4 4 C 1.54915 * 110.74624 * 123.30622 * 2 1 3 5 5 C 1.52176 * 103.16555 * 155.43135 * 4 2 1 6 6 O 1.20761 * 127.08826 * 157.89206 * 5 4 2 7 7 C 1.51561 * 105.82281 * 337.89728 * 5 4 2 8 8 N 1.47900 * 107.37451 * 359.08312 * 7 5 4 9 9 C 1.46896 * 110.99704 * 145.07957 * 8 7 5 10 10 C 1.53002 * 109.47246 * 53.18990 * 9 8 7 11 11 C 1.50706 * 109.46931 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 18 18 H 1.48498 * 109.47295 * 60.00420 * 15 13 11 19 19 H 1.08998 * 109.46685 * 183.29706 * 1 2 3 20 20 H 1.08997 * 109.47001 * 303.29933 * 1 2 3 21 21 H 1.08996 * 109.47111 * 63.30174 * 1 2 3 22 22 H 1.09000 * 110.67816 * 273.85498 * 4 2 1 23 23 H 1.09008 * 110.67814 * 37.01609 * 4 2 1 24 24 H 1.08995 * 109.86345 * 239.63664 * 7 5 4 25 25 H 1.08997 * 109.86549 * 118.53348 * 7 5 4 26 26 H 1.09004 * 109.47535 * 293.19137 * 9 8 7 27 27 H 1.09004 * 109.47041 * 173.19177 * 9 8 7 28 28 H 1.09000 * 109.46986 * 60.00111 * 10 9 8 29 29 H 1.08992 * 109.46974 * 300.00175 * 10 9 8 30 30 H 0.97000 * 119.99706 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0788 -0.7955 1.2108 5 6 3.4618 -1.2263 0.7444 6 8 4.3996 -1.5391 1.4380 7 6 3.4197 -1.1816 -0.7700 8 7 2.0564 -0.7631 -1.1618 9 6 2.0890 0.0726 -2.3694 10 6 2.8597 -0.6552 -3.4727 11 6 2.8926 0.2019 -4.7118 12 1 2.4122 1.1692 -4.7123 13 6 3.5360 -0.2489 -5.8449 14 7 4.1205 -1.4270 -5.8445 15 14 3.5773 0.8139 -7.3806 16 1 4.3242 0.1069 -8.4518 17 1 2.1892 1.0781 -7.8374 18 1 4.2510 2.1012 -7.0737 19 1 -0.3632 -1.0260 0.0591 20 1 -0.3633 0.5642 0.8589 21 1 -0.3633 0.4617 -0.9181 22 1 2.1510 -0.1561 2.0906 23 1 1.4536 -1.6647 1.4155 24 1 3.6347 -2.1701 -1.1757 25 1 4.1491 -0.4609 -1.1397 26 1 2.5830 1.0178 -2.1441 27 1 1.0701 0.2661 -2.7050 28 1 2.3657 -1.6004 -3.6981 29 1 3.8785 -0.8487 -3.1372 30 1 4.0993 -1.9786 -5.0470 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282503.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = -67.451362 kcal Electronic energy + Delta-G solvation = -12506.887613 eV Core-core repulsion = 10300.780212 eV Total energy + Delta-G solvation = -2206.107401 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.18044 -38.87315 -35.91812 -33.49305 -31.45679 -29.58548 -27.02093 -25.66632 -22.95287 -21.48702 -20.78186 -18.86339 -17.65684 -17.03162 -16.04985 -15.75143 -15.67316 -15.52468 -15.14775 -14.55918 -14.00759 -13.78227 -13.44523 -13.21014 -12.73624 -12.68573 -12.43126 -12.27813 -11.97171 -11.77777 -11.62690 -10.74402 -10.68956 -10.54002 -9.57358 -8.70609 -6.41478 0.68705 1.52509 1.60938 1.80106 2.54856 2.78731 3.01496 3.15045 3.46248 3.67820 4.05123 4.19126 4.33347 4.37465 4.49948 4.56211 4.73908 4.78891 4.85767 4.93176 5.01311 5.24793 5.36634 5.38368 5.67480 5.87765 6.06573 6.16710 6.27695 6.55379 7.41023 8.70521 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050779 B = 0.008134 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.276887 B = 3441.424494 C = 3834.452503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.160 4.160 5 C 0.374 3.626 6 O -0.475 6.475 7 C -0.024 4.024 8 N -0.510 5.510 9 C 0.077 3.923 10 C 0.013 3.987 11 C -0.621 4.621 12 H 0.054 0.946 13 C -0.039 4.039 14 N -0.937 5.937 15 Si 1.118 2.882 16 H -0.285 1.285 17 H -0.266 1.266 18 H -0.269 1.269 19 H 0.066 0.934 20 H 0.088 0.912 21 H 0.049 0.951 22 H 0.124 0.876 23 H 0.132 0.868 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.075 0.925 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 4.164 12.136 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.054 4.054 3 H 0.080 0.920 4 C -0.197 4.197 5 C 0.251 3.749 6 O -0.350 6.350 7 C -0.153 4.153 8 N -0.236 5.236 9 C -0.051 4.051 10 C -0.025 4.025 11 C -0.659 4.659 12 H 0.072 0.928 13 C -0.237 4.237 14 N -0.574 5.574 15 Si 0.939 3.061 16 H -0.210 1.210 17 H -0.191 1.191 18 H -0.194 1.194 19 H 0.085 0.915 20 H 0.106 0.894 21 H 0.068 0.932 22 H 0.142 0.858 23 H 0.150 0.850 24 H 0.116 0.884 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.094 0.906 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.462 3.614 10.840 13.127 hybrid contribution 0.293 0.290 1.343 1.405 sum -6.169 3.904 12.183 14.203 Atomic orbital electron populations 1.21645 0.91240 1.03144 1.02545 1.22986 0.98280 0.95653 0.88449 0.92030 1.23145 0.93764 1.03360 0.99478 1.25341 0.89470 0.69319 0.90740 1.90404 1.41351 1.38869 1.64365 1.23266 0.92966 1.03257 0.95808 1.65072 1.16712 1.38063 1.03730 1.22067 1.00388 0.93357 0.89257 1.19203 0.93881 0.95467 0.93924 1.22446 1.38653 1.05327 0.99469 0.92774 1.27459 0.92485 0.98187 1.05525 1.70919 1.43468 1.11342 1.31713 0.82931 0.77661 0.73855 0.71679 1.21027 1.19145 1.19397 0.91521 0.89358 0.93192 0.85790 0.85004 0.88448 0.91628 0.95451 0.90637 0.98974 0.98973 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.53 71.98 0.69 -1.81 16 2 C 0.05 1.29 2.94 45.24 0.13 1.43 16 3 H 0.06 1.47 7.84 -2.39 -0.02 1.45 16 4 C -0.16 -3.26 6.40 30.98 0.20 -3.06 16 5 C 0.37 10.89 8.01 29.85 0.24 11.13 16 6 O -0.48 -16.42 17.99 -1.45 -0.03 -16.45 16 7 C -0.02 -0.82 5.24 85.64 0.45 -0.37 16 8 N -0.51 -17.00 5.12 -862.90 -4.42 -21.42 16 9 C 0.08 3.10 4.79 86.30 0.41 3.52 16 10 C 0.01 0.65 4.04 29.85 0.12 0.77 16 11 C -0.62 -35.29 9.11 25.60 0.23 -35.06 16 12 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 13 C -0.04 -2.27 5.46 84.66 0.46 -1.81 16 14 N -0.94 -58.73 13.65 21.45 0.29 -58.43 16 15 Si 1.12 50.05 29.90 68.60 2.05 52.11 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 20 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.05 1.10 7.74 -2.39 -0.02 1.08 16 22 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.13 2.26 8.01 -2.38 -0.02 2.24 16 24 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 25 H 0.07 2.45 7.12 -2.39 -0.02 2.44 16 26 H 0.03 1.09 7.89 -2.39 -0.02 1.07 16 27 H 0.08 2.98 7.77 -2.38 -0.02 2.96 16 28 H -0.01 -0.46 8.01 -2.39 -0.02 -0.47 16 29 H -0.01 -0.43 6.50 -2.39 -0.02 -0.45 16 30 H 0.25 16.21 7.22 -92.71 -0.67 15.55 16 Total: -1.00 -67.65 251.87 2.04 -65.61 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.21 Total: 3.85 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 2.93 Total: -25.27 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -4.13 Total: -79.85 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.03 Total: -16.45 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.11 kcal Total: -67.65 2.04 -65.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282503.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.841 kcal (2) G-P(sol) polarization free energy of solvation -67.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds