Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47481 * 2 1 4 4 C 1.53006 * 109.46659 * 120.00192 * 2 1 3 5 5 H 1.09002 * 109.87556 * 179.48965 * 4 2 1 6 6 C 1.53809 * 109.89231 * 300.69898 * 4 2 1 7 7 C 1.52066 * 104.64795 * 136.49056 * 6 4 2 8 8 O 1.20769 * 127.97627 * 152.35378 * 7 6 4 9 9 C 1.51676 * 104.09621 * 332.35906 * 7 6 4 10 10 N 1.46862 * 106.78620 * 28.81481 * 9 7 6 11 11 C 1.36936 * 125.67088 * 161.49996 * 10 9 7 12 12 H 1.07994 * 120.00064 * 190.12260 * 11 10 9 13 13 C 1.38813 * 119.99614 * 10.12076 * 11 10 9 14 14 N 1.31617 * 120.00851 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99810 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47386 * 89.99728 * 15 13 11 17 17 H 1.48497 * 109.47402 * 210.00386 * 15 13 11 18 18 H 1.48512 * 109.46922 * 329.99909 * 15 13 11 19 19 H 1.09001 * 109.46869 * 66.23072 * 1 2 3 20 20 H 1.08990 * 109.47368 * 186.23157 * 1 2 3 21 21 H 1.08999 * 109.46525 * 306.23531 * 1 2 3 22 22 H 1.08999 * 109.46809 * 239.99822 * 2 1 3 23 23 H 1.08998 * 109.47225 * 174.43590 * 3 2 1 24 24 H 1.08996 * 109.46829 * 294.44060 * 3 2 1 25 25 H 1.09003 * 109.46844 * 54.43569 * 3 2 1 26 26 H 1.08998 * 110.40757 * 255.28285 * 6 4 2 27 27 H 1.09008 * 110.40543 * 17.58112 * 6 4 2 28 28 H 1.08994 * 110.00460 * 269.46513 * 9 7 6 29 29 H 1.09008 * 110.00180 * 148.15313 * 9 7 6 30 30 H 0.96990 * 120.00874 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1299 -0.7331 1.2515 6 6 1.5182 -0.0141 2.5116 7 6 1.0757 -1.1428 3.4296 8 8 1.0328 -1.1455 4.6365 9 6 0.7006 -2.2651 2.4808 10 7 1.5253 -2.0966 1.2774 11 6 1.7724 -3.0612 0.3373 12 1 2.5198 -2.8941 -0.4242 13 6 1.0624 -4.2537 0.3632 14 7 0.1513 -4.4572 1.2909 15 14 1.4001 -5.5697 -0.9188 16 1 2.4639 -6.4805 -0.4249 17 1 0.1597 -6.3470 -1.1689 18 1 1.8450 -4.9278 -2.1819 19 1 -0.3633 0.4142 -0.9405 20 1 -0.3633 -1.0215 0.1115 21 1 -0.3632 0.6075 0.8289 22 1 1.8933 -0.5139 -0.8900 23 1 3.1256 1.4440 0.0996 24 1 1.7604 1.9267 -0.9356 25 1 1.5977 1.9842 0.8360 26 1 2.3141 0.5658 2.9788 27 1 0.6743 0.6303 2.2648 28 1 -0.3559 -2.1967 2.2215 29 1 0.9090 -3.2298 2.9436 30 1 -0.3446 -5.2906 1.3093 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282567.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = -37.450292 kcal Electronic energy + Delta-G solvation = -13153.913810 eV Core-core repulsion = 10949.107354 eV Total energy + Delta-G solvation = -2204.806457 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84931 -38.63518 -35.47278 -33.45683 -30.68874 -28.67885 -27.73056 -26.28585 -23.16493 -21.01586 -19.98698 -18.77457 -17.21941 -16.91770 -16.07356 -15.90281 -15.38678 -14.74367 -14.59557 -14.18768 -13.87461 -13.43171 -13.22520 -12.79274 -12.71683 -12.61470 -12.48187 -12.14187 -11.93331 -11.56428 -11.48563 -11.15703 -10.71277 -10.39107 -8.88258 -7.85828 -5.23455 0.91216 1.49276 1.49674 1.58354 2.48468 3.26263 3.35723 3.64694 3.87592 4.02519 4.20947 4.33773 4.49785 4.61257 4.80556 4.92154 4.99040 5.12204 5.14805 5.28046 5.34077 5.41893 5.47713 5.58753 5.64859 5.74993 6.18500 6.49958 7.06331 7.74081 8.36888 9.24933 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032878 B = 0.014500 C = 0.011128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.431919 B = 1930.574133 C = 2515.555663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.137 4.137 4 C 0.161 3.839 5 H 0.046 0.954 6 C -0.173 4.173 7 C 0.359 3.641 8 O -0.484 6.484 9 C 0.127 3.873 10 N -0.601 5.601 11 C -0.225 4.225 12 H 0.088 0.912 13 C -0.062 4.062 14 N -0.953 5.953 15 Si 0.974 3.026 16 H -0.290 1.290 17 H -0.298 1.298 18 H -0.266 1.266 19 H 0.054 0.946 20 H 0.031 0.969 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 10.485 -2.804 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.119 4.119 3 C -0.195 4.195 4 C 0.056 3.944 5 H 0.064 0.936 6 C -0.210 4.210 7 C 0.236 3.764 8 O -0.360 6.360 9 C 0.000 4.000 10 N -0.327 5.327 11 C -0.354 4.354 12 H 0.106 0.894 13 C -0.255 4.255 14 N -0.602 5.602 15 Si 0.803 3.197 16 H -0.217 1.217 17 H -0.225 1.225 18 H -0.191 1.191 19 H 0.073 0.927 20 H 0.050 0.950 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.133 0.867 27 H 0.146 0.854 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.415 10.286 -2.236 10.800 hybrid contribution -0.185 -1.336 -0.595 1.475 sum 2.229 8.950 -2.831 9.648 Atomic orbital electron populations 1.21690 0.95712 1.00765 1.00914 1.21443 0.96016 0.96563 0.97916 1.21793 1.01152 0.94154 1.02365 1.21115 0.96534 0.83497 0.93294 0.93631 1.23084 1.04580 0.97839 0.95512 1.25857 0.69601 0.92447 0.88467 1.90312 1.45336 1.84064 1.16242 1.21254 0.95292 0.95705 0.87724 1.44191 1.57633 1.08090 1.22767 1.19292 1.15688 0.94440 1.05947 0.89414 1.25614 0.98179 1.00897 1.00789 1.70096 1.27935 1.25732 1.36433 0.85137 0.76314 0.79034 0.79215 1.21697 1.22475 1.19067 0.92703 0.94977 0.92258 0.93031 0.92244 0.92112 0.91485 0.86722 0.85381 0.93692 0.93150 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.74 71.98 0.63 -3.71 16 2 C -0.10 -3.11 2.67 -10.79 -0.03 -3.14 16 3 C -0.14 -3.07 8.85 71.98 0.64 -2.43 16 4 C 0.16 5.85 3.01 45.20 0.14 5.99 16 5 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 6 C -0.17 -5.41 5.28 30.56 0.16 -5.25 16 7 C 0.36 14.73 8.10 29.85 0.24 14.98 16 8 O -0.48 -21.66 17.99 -1.48 -0.03 -21.68 16 9 C 0.13 6.19 5.24 85.88 0.45 6.64 16 10 N -0.60 -28.59 2.22 -677.22 -1.51 -30.10 16 11 C -0.23 -11.79 9.84 84.03 0.83 -10.96 16 12 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 13 C -0.06 -3.37 5.48 84.86 0.46 -2.91 16 14 N -0.95 -55.82 10.43 21.65 0.23 -55.60 16 15 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 20 H 0.03 1.32 7.34 -2.39 -0.02 1.31 16 21 H 0.06 1.67 6.32 -2.39 -0.02 1.65 16 22 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.30 7.13 -2.39 -0.02 1.29 16 26 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.13 3.46 5.31 -2.38 -0.01 3.45 16 28 H 0.05 2.37 7.95 -2.39 -0.02 2.36 16 29 H 0.05 2.87 6.93 -2.38 -0.02 2.85 16 30 H 0.25 14.26 8.31 -92.72 -0.77 13.49 16 Total: -1.00 -62.28 244.56 5.35 -56.93 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.11 Total: 4.71 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 3.52 Total: -0.80 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -1.28 Total: -85.70 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.03 Total: -21.68 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.28 5.35 -56.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282567.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.477 kcal (2) G-P(sol) polarization free energy of solvation -62.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds