Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47208 * 2 1 4 4 C 1.52991 * 109.47186 * 120.00290 * 2 1 3 5 5 H 1.09002 * 110.01970 * 58.87776 * 4 2 1 6 6 C 1.53821 * 110.00353 * 297.80374 * 4 2 1 7 7 C 1.51958 * 104.70333 * 223.79739 * 6 4 2 8 8 O 1.20755 * 127.92605 * 207.45559 * 7 6 4 9 9 C 1.51677 * 104.14700 * 27.43866 * 7 6 4 10 10 N 1.46856 * 106.75015 * 331.19249 * 9 7 6 11 11 C 1.36934 * 125.66630 * 198.48009 * 10 9 7 12 12 H 1.08001 * 119.99637 * 163.01663 * 11 10 9 13 13 C 1.38817 * 120.00592 * 343.01643 * 11 10 9 14 14 N 1.31615 * 119.99437 * 329.73709 * 13 11 10 15 15 Si 1.86795 * 119.99925 * 149.73045 * 13 11 10 16 16 H 1.48493 * 109.47603 * 270.00010 * 15 13 11 17 17 H 1.48503 * 109.47090 * 30.00722 * 15 13 11 18 18 H 1.48507 * 109.46529 * 150.00363 * 15 13 11 19 19 H 1.09001 * 109.46856 * 299.99997 * 1 2 3 20 20 H 1.09004 * 109.47008 * 59.99484 * 1 2 3 21 21 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46885 * 240.00558 * 2 1 3 23 23 H 1.08998 * 109.46907 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47218 * 300.00165 * 3 2 1 25 25 H 1.09000 * 109.46742 * 60.00471 * 3 2 1 26 26 H 1.09004 * 110.54618 * 104.90155 * 6 4 2 27 27 H 1.09004 * 110.29971 * 342.57276 * 6 4 2 28 28 H 1.08999 * 110.00130 * 211.86716 * 9 7 6 29 29 H 1.08999 * 110.04134 * 90.53567 * 9 7 6 30 30 H 0.96997 * 120.00438 * 354.48047 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6653 -1.7447 1.2682 6 6 1.5798 0.0255 2.5127 7 6 2.8046 0.0539 3.4116 8 8 2.8392 0.1069 4.6175 9 6 3.9738 0.0000 2.4468 10 7 3.5088 -0.7267 1.2584 11 6 4.3112 -1.3077 0.3131 12 1 3.9021 -2.0423 -0.3648 13 6 5.6503 -0.9526 0.2259 14 7 6.0325 0.2610 0.5629 15 14 6.9097 -2.1970 -0.3693 16 1 7.4429 -2.9554 0.7907 17 1 6.2652 -3.1370 -1.3213 18 1 8.0224 -1.4878 -1.0508 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 0.7644 -0.5107 2.9983 27 1 1.2697 1.0397 2.2607 28 1 4.8102 -0.5289 2.9038 29 1 4.2775 1.0099 2.1712 30 1 5.3706 0.9310 0.7952 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282568.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -23.413043 kcal Electronic energy + Delta-G solvation = -13195.050927 eV Core-core repulsion = 10990.853171 eV Total energy + Delta-G solvation = -2204.197756 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.39851 -37.15823 -34.02052 -31.82029 -28.80715 -27.24254 -26.61026 -24.20431 -21.60811 -19.41368 -18.71200 -17.41030 -15.65728 -15.32212 -14.48085 -14.25919 -13.69626 -13.34585 -13.19999 -12.93882 -12.33813 -12.03847 -11.85479 -11.40014 -11.32315 -10.84248 -10.68849 -10.27667 -10.23754 -10.06455 -9.93401 -9.66017 -8.90717 -8.46637 -7.07130 -6.19237 -3.24795 2.38714 3.49132 3.51789 3.67425 4.45763 4.77856 5.06784 5.22349 5.28452 5.37720 5.57756 5.62687 5.72776 5.78583 6.00835 6.06091 6.22959 6.28410 6.39402 6.49011 6.64200 6.73734 6.79633 6.93304 7.03811 7.70184 7.95723 8.39342 8.90645 9.70183 10.21718 11.12350 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033041 B = 0.014286 C = 0.011454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.236355 B = 1959.442086 C = 2443.994075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.169 3.831 5 H 0.044 0.956 6 C -0.194 4.194 7 C 0.364 3.636 8 O -0.459 6.459 9 C 0.088 3.912 10 N -0.583 5.583 11 C -0.335 4.335 12 H 0.070 0.930 13 C -0.022 4.022 14 N -0.908 5.908 15 Si 1.065 2.935 16 H -0.293 1.293 17 H -0.291 1.291 18 H -0.290 1.290 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.049 0.951 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 0.283 -0.450 8.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.195 4.195 4 C 0.063 3.937 5 H 0.061 0.939 6 C -0.232 4.232 7 C 0.240 3.760 8 O -0.333 6.333 9 C -0.038 4.038 10 N -0.310 5.310 11 C -0.462 4.462 12 H 0.088 0.912 13 C -0.224 4.224 14 N -0.549 5.549 15 Si 0.895 3.105 16 H -0.220 1.220 17 H -0.218 1.218 18 H -0.217 1.217 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.717 -0.004 -0.145 6.719 hybrid contribution -1.705 0.296 0.042 1.731 sum -8.423 0.292 -0.103 8.428 Atomic orbital electron populations 1.21869 0.96598 1.00968 1.00876 1.21505 0.93484 0.97064 1.00311 1.21757 1.02982 0.95403 0.99363 1.20880 0.85888 0.96025 0.90948 0.93853 1.23170 0.98640 1.03477 0.97870 1.25409 0.94587 0.67339 0.88667 1.90339 1.89165 1.38453 1.15358 1.21612 0.94894 0.98876 0.88412 1.44180 0.99514 1.65022 1.22259 1.19664 0.93025 1.19411 1.14110 0.91176 1.25749 0.97176 0.99135 1.00370 1.70805 1.38054 1.01336 1.44685 0.83507 0.75885 0.75040 0.76068 1.22030 1.21785 1.21658 0.93182 0.93430 0.93216 0.90829 0.91066 0.94174 0.93978 0.89718 0.87556 0.91303 0.91883 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.98 37.16 0.33 -1.67 16 2 C -0.10 -1.80 2.67 -90.62 -0.24 -2.04 16 3 C -0.14 -2.42 8.76 37.16 0.33 -2.09 16 4 C 0.17 3.26 2.98 -67.30 -0.20 3.06 16 5 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.19 -3.29 5.22 -26.83 -0.14 -3.43 16 7 C 0.36 7.37 8.10 -27.93 -0.23 7.14 16 8 O -0.46 -10.05 17.99 6.00 0.11 -9.94 16 9 C 0.09 2.03 5.39 -4.52 -0.02 2.01 16 10 N -0.58 -13.77 2.28 -165.40 -0.38 -14.15 16 11 C -0.34 -8.85 9.55 -15.06 -0.14 -8.99 16 12 H 0.07 1.86 7.99 -52.49 -0.42 1.44 16 13 C -0.02 -0.59 5.11 -17.43 -0.09 -0.68 16 14 N -0.91 -26.18 13.00 55.49 0.72 -25.46 16 15 Si 1.07 24.70 30.01 -169.99 -5.10 19.60 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 19 H 0.05 0.63 7.05 -51.93 -0.37 0.27 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.07 1.44 7.98 -51.93 -0.41 1.03 16 23 H 0.07 1.52 7.63 -51.93 -0.40 1.12 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.67 6.03 -51.93 -0.31 0.35 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.11 1.64 5.24 -51.93 -0.27 1.37 16 28 H 0.07 1.75 8.13 -51.93 -0.42 1.32 16 29 H 0.06 1.51 6.50 -51.93 -0.34 1.17 16 30 H 0.27 7.64 6.10 -40.82 -0.25 7.39 16 LS Contribution 244.70 15.07 3.69 3.69 Total: -1.00 -28.90 244.70 -5.47 -34.36 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.10 Total: -1.40 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.41 Total: -6.70 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.34 Total: -39.61 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.11 Total: -9.94 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.10 Total: 19.60 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.90 -5.47 -34.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282568.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.952 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds