Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47208 * 2 1 4 4 C 1.52991 * 109.47186 * 120.00290 * 2 1 3 5 5 H 1.09002 * 110.01970 * 58.87776 * 4 2 1 6 6 C 1.53821 * 110.00353 * 297.80374 * 4 2 1 7 7 C 1.51958 * 104.70333 * 223.79739 * 6 4 2 8 8 O 1.20755 * 127.92605 * 207.45559 * 7 6 4 9 9 C 1.51677 * 104.14700 * 27.43866 * 7 6 4 10 10 N 1.46856 * 106.75015 * 331.19249 * 9 7 6 11 11 C 1.36934 * 125.66630 * 198.48009 * 10 9 7 12 12 H 1.08001 * 119.99637 * 163.01663 * 11 10 9 13 13 C 1.38817 * 120.00592 * 343.01643 * 11 10 9 14 14 N 1.31615 * 119.99437 * 329.73709 * 13 11 10 15 15 Si 1.86795 * 119.99925 * 149.73045 * 13 11 10 16 16 H 1.48493 * 109.47603 * 270.00010 * 15 13 11 17 17 H 1.48503 * 109.47090 * 30.00722 * 15 13 11 18 18 H 1.48507 * 109.46529 * 150.00363 * 15 13 11 19 19 H 1.09001 * 109.46856 * 299.99997 * 1 2 3 20 20 H 1.09004 * 109.47008 * 59.99484 * 1 2 3 21 21 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46885 * 240.00558 * 2 1 3 23 23 H 1.08998 * 109.46907 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47218 * 300.00165 * 3 2 1 25 25 H 1.09000 * 109.46742 * 60.00471 * 3 2 1 26 26 H 1.09004 * 110.54618 * 104.90155 * 6 4 2 27 27 H 1.09004 * 110.29971 * 342.57276 * 6 4 2 28 28 H 1.08999 * 110.00130 * 211.86716 * 9 7 6 29 29 H 1.08999 * 110.04134 * 90.53567 * 9 7 6 30 30 H 0.96997 * 120.00438 * 354.48047 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6653 -1.7447 1.2682 6 6 1.5798 0.0255 2.5127 7 6 2.8046 0.0539 3.4116 8 8 2.8392 0.1069 4.6175 9 6 3.9738 0.0000 2.4468 10 7 3.5088 -0.7267 1.2584 11 6 4.3112 -1.3077 0.3131 12 1 3.9021 -2.0423 -0.3648 13 6 5.6503 -0.9526 0.2259 14 7 6.0325 0.2610 0.5629 15 14 6.9097 -2.1970 -0.3693 16 1 7.4429 -2.9554 0.7907 17 1 6.2652 -3.1370 -1.3213 18 1 8.0224 -1.4878 -1.0508 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 0.7644 -0.5107 2.9983 27 1 1.2697 1.0397 2.2607 28 1 4.8102 -0.5289 2.9038 29 1 4.2775 1.0099 2.1712 30 1 5.3706 0.9310 0.7952 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282568.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = -40.616646 kcal Electronic energy + Delta-G solvation = -13195.796931 eV Core-core repulsion = 10990.853171 eV Total energy + Delta-G solvation = -2204.943760 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.06205 -38.81084 -35.73872 -33.59875 -30.58495 -28.94616 -27.86354 -26.05368 -23.26516 -21.12458 -20.34876 -19.23954 -17.27641 -16.97551 -16.17796 -15.99951 -15.55723 -14.90257 -14.79665 -14.51654 -13.97960 -13.53623 -13.30351 -13.03485 -12.69921 -12.59059 -12.36835 -11.88867 -11.84655 -11.69827 -11.60280 -11.25853 -10.60408 -10.48699 -9.03112 -8.31355 -5.33260 0.72965 1.59749 1.66027 1.83159 2.59897 3.04224 3.26947 3.42756 3.66189 3.87954 4.10148 4.21355 4.37486 4.48317 4.60128 4.72040 4.83544 4.84978 4.89513 5.05197 5.17827 5.22053 5.34844 5.52919 5.58516 5.76697 6.25486 6.36110 6.88765 7.67538 8.23319 9.00630 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033041 B = 0.014286 C = 0.011454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.236355 B = 1959.442086 C = 2443.994075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.132 4.132 4 C 0.160 3.840 5 H 0.047 0.953 6 C -0.173 4.173 7 C 0.374 3.626 8 O -0.474 6.474 9 C 0.091 3.909 10 N -0.598 5.598 11 C -0.332 4.332 12 H 0.067 0.933 13 C -0.074 4.074 14 N -0.941 5.941 15 Si 1.111 2.889 16 H -0.291 1.291 17 H -0.270 1.270 18 H -0.296 1.296 19 H 0.069 0.931 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.023 0.977 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.726 -0.053 -0.512 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 C -0.189 4.189 4 C 0.055 3.945 5 H 0.065 0.935 6 C -0.210 4.210 7 C 0.251 3.749 8 O -0.348 6.348 9 C -0.036 4.036 10 N -0.325 5.325 11 C -0.460 4.460 12 H 0.085 0.915 13 C -0.271 4.271 14 N -0.583 5.583 15 Si 0.936 3.064 16 H -0.218 1.218 17 H -0.195 1.195 18 H -0.223 1.223 19 H 0.088 0.912 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.139 0.861 27 H 0.149 0.851 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.059 -0.353 -0.212 9.068 hybrid contribution -1.027 0.399 0.061 1.103 sum -10.086 0.046 -0.152 10.087 Atomic orbital electron populations 1.21788 0.92827 1.02198 1.02584 1.21406 0.96480 0.96098 0.97870 1.21689 0.99905 0.96116 1.01225 1.21146 0.83246 0.96943 0.93193 0.93539 1.23104 0.97473 1.05012 0.95421 1.25291 0.94840 0.66610 0.88172 1.90341 1.89357 1.39265 1.15887 1.21482 0.95448 0.97540 0.89133 1.44292 1.01560 1.64811 1.21833 1.19829 0.93546 1.18638 1.13952 0.91550 1.26930 0.99346 0.99831 1.01010 1.70893 1.37844 1.02136 1.47459 0.82892 0.73938 0.73487 0.76057 1.21787 1.19461 1.22300 0.91157 0.92081 0.92284 0.93702 0.95731 0.92487 0.91926 0.86135 0.85125 0.94935 0.93347 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.98 71.98 0.65 -2.51 16 2 C -0.10 -3.22 2.67 -10.80 -0.03 -3.25 16 3 C -0.13 -4.43 8.76 71.98 0.63 -3.80 16 4 C 0.16 5.86 2.98 45.19 0.13 5.99 16 5 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 6 C -0.17 -5.26 5.22 30.53 0.16 -5.10 16 7 C 0.37 14.64 8.10 29.82 0.24 14.88 16 8 O -0.47 -20.08 17.99 -1.43 -0.03 -20.10 16 9 C 0.09 4.27 5.39 85.88 0.46 4.73 16 10 N -0.60 -28.45 2.28 -677.22 -1.55 -30.00 16 11 C -0.33 -17.78 9.55 84.04 0.80 -16.98 16 12 H 0.07 3.55 7.99 -2.91 -0.02 3.53 16 13 C -0.07 -4.13 5.11 84.86 0.43 -3.69 16 14 N -0.94 -56.20 13.00 21.65 0.28 -55.92 16 15 Si 1.11 50.60 30.01 68.60 2.06 52.66 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 19 H 0.07 1.38 7.05 -2.39 -0.02 1.36 16 20 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.04 1.72 7.98 -2.39 -0.02 1.70 16 23 H 0.02 1.04 7.63 -2.39 -0.02 1.02 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.80 6.03 -2.39 -0.01 1.79 16 26 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 27 H 0.13 3.42 5.24 -2.38 -0.01 3.41 16 28 H 0.03 1.73 8.13 -2.39 -0.02 1.71 16 29 H 0.05 2.43 6.50 -2.39 -0.02 2.42 16 30 H 0.26 15.44 6.10 -92.71 -0.57 14.87 16 Total: -1.00 -63.83 244.70 5.57 -58.26 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.32 Total: 4.82 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 3.48 Total: -9.72 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.26 Total: -85.91 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.03 Total: -20.10 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.06 Total: 52.66 kcal Total: -63.83 5.57 -58.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282568.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.640 kcal (2) G-P(sol) polarization free energy of solvation -63.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds