Wall clock time and date at job start Mon Mar 30 2020 02:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 120.00365 * 2 1 4 4 N 1.34779 * 119.99891 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00224 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.40916 * 324.85320 * 5 4 2 7 7 C 1.52959 * 109.36069 * 84.67865 * 5 4 2 8 8 C 1.53659 * 109.32409 * 183.80043 * 7 5 4 9 9 C 1.51265 * 108.31243 * 305.13494 * 8 7 5 10 10 C 1.37871 * 120.85368 * 231.38391 * 9 8 7 11 11 N 1.31512 * 120.00422 * 174.56911 * 10 9 8 12 12 Si 1.86803 * 119.99828 * 354.56805 * 10 9 8 13 13 H 1.48504 * 109.46902 * 90.00235 * 12 10 9 14 14 H 1.48495 * 109.47270 * 329.99934 * 12 10 9 15 15 H 1.48500 * 109.47240 * 209.99801 * 12 10 9 16 16 C 1.51271 * 118.29782 * 51.65724 * 9 8 7 17 17 C 1.52955 * 109.41446 * 204.99592 * 5 4 2 18 18 H 1.09003 * 109.46890 * 270.00451 * 1 2 3 19 19 H 1.09001 * 109.46802 * 29.99569 * 1 2 3 20 20 H 1.08997 * 109.47099 * 150.00169 * 1 2 3 21 21 H 0.97004 * 120.00037 * 359.97438 * 4 2 1 22 22 H 1.09002 * 109.47969 * 303.64693 * 7 5 4 23 23 H 1.08996 * 109.48175 * 63.67659 * 7 5 4 24 24 H 1.09007 * 109.69018 * 185.51667 * 8 7 5 25 25 H 1.09003 * 109.78666 * 64.80969 * 8 7 5 26 26 H 0.97002 * 120.00071 * 5.61070 * 11 10 9 27 27 H 1.09003 * 109.62737 * 68.11500 * 16 9 8 28 28 H 1.08997 * 109.62522 * 188.49300 * 16 9 8 29 29 H 1.09008 * 109.48039 * 56.38223 * 17 5 4 30 30 H 1.08996 * 109.49903 * 296.35432 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0083 -0.3263 -0.5911 7 6 4.1524 -1.0345 1.4372 8 6 5.6860 -0.9389 1.4290 9 6 6.2329 -2.1365 0.6843 10 6 7.2106 -2.9311 1.2441 11 7 7.5982 -4.0277 0.6303 12 14 7.9850 -2.4501 2.8746 13 1 7.2079 -3.0513 3.9881 14 1 7.9787 -0.9712 3.0085 15 1 9.3841 -2.9455 2.9235 16 6 5.6840 -2.4364 -0.6930 17 6 4.1544 -2.4744 -0.6102 18 1 -0.3633 0.0001 1.0277 19 1 -0.3633 0.8900 -0.5138 20 1 -0.3633 -0.8900 -0.5138 21 1 1.6958 -2.0073 -0.0005 22 1 3.7356 -0.1337 1.8877 23 1 3.8427 -1.9061 2.0138 24 1 6.0597 -0.9425 2.4530 25 1 5.9959 -0.0225 0.9266 26 1 7.2564 -4.2356 -0.2534 27 1 5.9937 -1.6562 -1.3884 28 1 6.0591 -3.4011 -1.0345 29 1 3.7390 -2.5942 -1.6109 30 1 3.8449 -3.3122 0.0145 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282574.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:52 Heat of formation + Delta-G solvation = -87.086471 kcal Electronic energy + Delta-G solvation = -12822.069622 eV Core-core repulsion = 10615.110779 eV Total energy + Delta-G solvation = -2206.958843 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.80985 -38.52697 -35.54077 -33.49744 -31.62825 -30.72315 -28.19063 -24.30039 -23.14484 -21.46525 -21.31525 -18.64020 -17.61322 -17.40210 -16.21260 -15.80838 -15.65070 -14.80763 -14.62147 -14.16493 -13.85573 -13.60868 -13.13427 -13.03577 -12.87073 -12.51021 -12.19967 -12.09579 -11.91921 -11.49559 -11.24349 -10.80565 -10.57526 -10.38603 -9.91588 -8.60126 -6.18058 1.50482 1.57706 1.69830 1.75588 2.36045 2.53536 3.14335 3.86861 4.04591 4.11931 4.39586 4.54278 4.60048 4.69214 4.79723 4.87119 4.92124 5.00718 5.13190 5.15823 5.19101 5.23545 5.45286 5.60861 5.67379 6.02523 6.21512 6.67861 6.74519 7.34914 7.50771 8.77735 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059189 B = 0.009874 C = 0.008993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.943476 B = 2834.994046 C = 3112.712867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.496 3.504 3 O -0.608 6.608 4 N -0.715 5.715 5 C 0.163 3.837 6 H 0.048 0.952 7 C -0.106 4.106 8 C -0.011 4.011 9 C -0.576 4.576 10 C -0.014 4.014 11 N -0.941 5.941 12 Si 1.096 2.904 13 H -0.269 1.269 14 H -0.268 1.268 15 H -0.291 1.291 16 C -0.005 4.005 17 C -0.098 4.098 18 H 0.110 0.890 19 H 0.093 0.907 20 H 0.109 0.891 21 H 0.414 0.586 22 H 0.037 0.963 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.003 0.997 26 H 0.261 0.739 27 H -0.003 1.003 28 H 0.024 0.976 29 H 0.059 0.941 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.390 2.833 0.534 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.286 3.714 3 O -0.490 6.490 4 N -0.366 5.366 5 C 0.058 3.942 6 H 0.067 0.933 7 C -0.145 4.145 8 C -0.050 4.050 9 C -0.595 4.595 10 C -0.213 4.213 11 N -0.579 5.579 12 Si 0.920 3.080 13 H -0.195 1.195 14 H -0.193 1.193 15 H -0.217 1.217 16 C -0.043 4.043 17 C -0.136 4.136 18 H 0.128 0.872 19 H 0.112 0.888 20 H 0.128 0.872 21 H 0.251 0.749 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.021 0.979 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.926 3.048 1.660 12.421 hybrid contribution -0.784 0.023 -1.448 1.647 sum -12.710 3.072 0.213 13.078 Atomic orbital electron populations 1.21881 0.87386 1.06268 1.06222 1.21835 0.92633 0.82778 0.74204 1.90688 1.72450 1.33380 1.52490 1.46265 1.06876 1.09392 1.74105 1.20568 0.79335 0.97883 0.96433 0.93336 1.21852 0.97346 0.99360 0.95935 1.19710 0.93027 0.95680 0.96540 1.21549 1.22161 1.12972 1.02862 1.26934 0.94795 0.92632 1.06943 1.70905 1.46921 1.24381 1.15741 0.83196 0.75920 0.76342 0.72528 1.19478 1.19344 1.21747 1.19432 0.92932 0.96132 0.95817 1.21630 0.97260 0.95667 0.99026 0.87177 0.88780 0.87246 0.74925 0.94394 0.92425 0.94610 0.97883 0.92710 0.98434 0.95749 0.92211 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.30 71.24 0.73 -1.87 16 2 C 0.50 14.80 7.90 87.66 0.69 15.49 16 3 O -0.61 -24.99 16.76 -3.02 -0.05 -25.04 16 4 N -0.72 -20.96 5.07 -442.67 -2.25 -23.21 16 5 C 0.16 6.34 2.35 44.96 0.11 6.45 16 6 H 0.05 2.18 7.58 -2.39 -0.02 2.17 16 7 C -0.11 -4.46 5.51 30.80 0.17 -4.29 16 8 C -0.01 -0.54 5.58 30.25 0.17 -0.37 16 9 C -0.58 -30.71 5.50 -16.17 -0.09 -30.80 16 10 C -0.01 -0.81 5.46 84.65 0.46 -0.34 16 11 N -0.94 -56.20 13.66 21.44 0.29 -55.91 16 12 Si 1.10 50.07 27.48 68.60 1.88 51.96 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.27 -11.48 6.71 99.48 0.67 -10.81 16 15 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 16 C 0.00 -0.25 5.96 30.11 0.18 -0.07 16 17 C -0.10 -3.88 5.40 30.66 0.17 -3.71 16 18 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 19 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.41 8.95 8.60 -92.71 -0.80 8.15 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.04 1.65 5.01 -2.38 -0.01 1.64 16 25 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.26 15.57 6.36 -92.71 -0.59 14.98 16 27 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.02 1.27 5.79 -2.39 -0.01 1.25 16 29 H 0.06 2.07 8.14 -2.38 -0.02 2.06 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -68.59 244.48 2.95 -65.64 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 0.48 Total: 6.06 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 2.59 Total: -19.51 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -1.95 Total: -79.11 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.88 Total: 51.96 kcal Total: -68.59 2.95 -65.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282574.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.447 kcal (2) G-P(sol) polarization free energy of solvation -68.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds