Wall clock time and date at job start Mon Mar 30 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46890 * 2 1 4 4 C 1.52994 * 109.47277 * 120.00266 * 2 1 3 5 5 H 1.08998 * 115.55149 * 325.66701 * 4 2 1 6 6 C 1.53071 * 117.53314 * 111.38379 * 4 2 1 7 7 C 1.52996 * 59.98475 * 107.47078 * 6 4 2 8 8 H 1.08994 * 117.50408 * 107.50415 * 7 6 4 9 9 N 1.46508 * 117.49848 * 252.50030 * 7 6 4 10 10 C 1.34770 * 120.00128 * 223.74343 * 9 7 6 11 11 O 1.21693 * 120.00233 * 0.02562 * 10 9 7 12 12 C 1.46377 * 120.00195 * 179.97438 * 10 9 7 13 13 H 1.08000 * 119.99233 * 6.24928 * 12 10 9 14 14 C 1.40046 * 120.00166 * 186.24331 * 12 10 9 15 15 N 1.30673 * 120.00213 * 184.67344 * 14 12 10 16 16 Si 1.86808 * 120.00121 * 4.68345 * 14 12 10 17 17 H 1.48502 * 109.46909 * 179.97438 * 16 14 12 18 18 H 1.48492 * 109.47046 * 59.99545 * 16 14 12 19 19 H 1.48502 * 109.46597 * 299.99568 * 16 14 12 20 20 H 1.09000 * 109.47385 * 60.00054 * 1 2 3 21 21 H 1.09008 * 109.47216 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47412 * 299.99679 * 1 2 3 23 23 H 1.09002 * 109.46889 * 240.00362 * 2 1 3 24 24 H 1.09006 * 109.47029 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47062 * 300.00144 * 3 2 1 26 26 H 1.08993 * 109.47277 * 60.00388 * 3 2 1 27 27 H 1.08999 * 117.51449 * 359.97438 * 6 4 2 28 28 H 1.09006 * 117.49819 * 214.95267 * 6 4 2 29 29 H 0.97002 * 120.00025 * 43.74408 * 9 7 6 30 30 H 0.97000 * 120.00052 * 354.90796 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.4311 -0.5980 2.1448 6 6 2.7425 -2.0669 1.0520 7 6 3.5550 -0.8281 1.4342 8 1 3.9428 -0.7747 2.4514 9 7 4.4063 -0.2324 0.4013 10 6 5.6594 0.1602 0.7047 11 8 6.0840 0.0194 1.8364 12 6 6.5101 0.7549 -0.3274 13 1 6.1027 0.9721 -1.3038 14 6 7.8521 1.0423 -0.0487 15 7 8.5872 1.6561 -0.9378 16 14 8.5916 0.5479 1.5940 17 1 10.0170 0.9621 1.6398 18 1 8.4993 -0.9254 1.7550 19 1 7.8466 1.2137 2.6926 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6765 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.8410 -2.4388 0.0322 28 1 2.5955 -2.8284 1.8180 29 1 4.0680 -0.1204 -0.5009 30 1 8.2259 1.8469 -1.8176 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282676.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:50 Heat of formation + Delta-G solvation = -46.081558 kcal Electronic energy + Delta-G solvation = -12635.712430 eV Core-core repulsion = 10430.531693 eV Total energy + Delta-G solvation = -2205.180736 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.91860 -36.90420 -33.40553 -32.84773 -31.43740 -26.95269 -26.18171 -22.75122 -21.67140 -20.28858 -18.93694 -18.05426 -15.77750 -15.43113 -14.52996 -13.78486 -13.70359 -13.63354 -13.14167 -12.79302 -12.43403 -12.12800 -12.05177 -11.70087 -11.11815 -10.86085 -10.71980 -10.49295 -10.26934 -10.06733 -9.63443 -9.21634 -8.96996 -7.95281 -7.66634 -7.00345 -4.94277 3.57105 3.69329 4.06546 4.08714 4.36001 4.46666 4.60997 4.86497 5.10165 5.20683 5.33379 5.51725 5.59039 5.64386 5.78153 5.81811 5.99647 6.03765 6.08494 6.15056 6.35888 6.40995 6.55589 6.65736 7.47259 7.68962 7.74983 8.09460 8.82338 9.04412 10.04283 10.32478 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055166 B = 0.009663 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.436617 B = 2896.992450 C = 3201.035224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.158 4.158 4 C -0.170 4.170 5 H 0.102 0.898 6 C -0.204 4.204 7 C 0.111 3.889 8 H 0.129 0.871 9 N -0.722 5.722 10 C 0.553 3.447 11 O -0.617 6.617 12 C -0.597 4.597 13 H 0.070 0.930 14 C 0.061 3.939 15 N -0.832 5.832 16 Si 1.131 2.869 17 H -0.322 1.322 18 H -0.291 1.291 19 H -0.281 1.281 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.389 0.611 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -3.442 0.791 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.215 4.215 4 C -0.190 4.190 5 H 0.120 0.880 6 C -0.243 4.243 7 C 0.003 3.997 8 H 0.146 0.854 9 N -0.371 5.371 10 C 0.362 3.638 11 O -0.510 6.510 12 C -0.634 4.634 13 H 0.088 0.912 14 C -0.157 4.157 15 N -0.460 5.460 16 Si 0.963 3.037 17 H -0.254 1.254 18 H -0.219 1.219 19 H -0.208 1.208 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.224 0.776 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.218 -3.397 2.357 11.956 hybrid contribution -1.906 -0.116 -1.672 2.538 sum -13.123 -3.513 0.685 13.603 Atomic orbital electron populations 1.21799 0.95413 1.01267 1.01358 1.20591 0.95142 0.96241 0.96170 1.22016 1.03519 0.95097 1.00883 1.22841 0.96613 0.99874 0.99624 0.88009 1.23533 1.06453 0.91776 1.02524 1.21382 0.86965 0.96249 0.95144 0.85379 1.45380 1.14701 1.65859 1.11162 1.18476 0.79705 0.77142 0.88500 1.90139 1.72174 1.64576 1.24111 1.22038 0.97257 1.44478 0.99593 0.91198 1.27171 0.93443 0.89353 1.05727 1.70656 1.40193 1.29096 1.06016 0.82372 0.71225 0.77093 0.72963 1.25423 1.21855 1.20765 0.93008 0.92940 0.92873 0.91639 0.90416 0.93354 0.93016 0.89180 0.89019 0.77645 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.17 37.16 0.34 -1.21 16 2 C -0.06 -0.84 2.43 -90.62 -0.22 -1.06 16 3 C -0.16 -2.30 8.86 37.16 0.33 -1.98 16 4 C -0.17 -2.45 5.15 -90.59 -0.47 -2.91 16 5 H 0.10 1.35 8.11 -51.93 -0.42 0.92 16 6 C -0.20 -3.02 10.11 -26.70 -0.27 -3.29 16 7 C 0.11 2.03 6.22 -67.93 -0.42 1.61 16 8 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 9 N -0.72 -15.42 3.78 -55.22 -0.21 -15.63 16 10 C 0.55 14.76 7.57 -12.99 -0.10 14.66 16 11 O -0.62 -17.84 11.64 5.19 0.06 -17.78 16 12 C -0.60 -16.92 9.96 -35.63 -0.36 -17.28 16 13 H 0.07 1.95 8.05 -52.49 -0.42 1.52 16 14 C 0.06 1.76 5.52 -17.37 -0.10 1.66 16 15 N -0.83 -24.15 13.64 55.55 0.76 -23.39 16 16 Si 1.13 30.16 25.99 -169.99 -4.42 25.74 16 17 H -0.32 -8.26 7.11 56.52 0.40 -7.86 16 18 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 19 H -0.28 -7.70 6.78 56.52 0.38 -7.32 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.89 7.61 -51.93 -0.40 0.49 16 24 H 0.08 1.36 5.39 -51.93 -0.28 1.08 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.39 7.58 6.79 -40.82 -0.28 7.30 16 30 H 0.28 7.71 8.72 -40.82 -0.36 7.36 16 LS Contribution 250.02 15.07 3.77 3.77 Total: -1.00 -30.62 250.02 -5.60 -36.23 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.31 Total: 0.86 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.26 Total: -9.79 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.55 Total: -39.02 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.06 Total: -17.78 kcal Atomic # 14 Polarization: 30.16 SS G_CDS: -4.42 Total: 25.74 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.62 -5.60 -36.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282676.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.855 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds