Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46890 * 2 1 4 4 C 1.52994 * 109.47277 * 120.00266 * 2 1 3 5 5 H 1.08998 * 115.55149 * 325.66701 * 4 2 1 6 6 C 1.53071 * 117.53314 * 111.38379 * 4 2 1 7 7 C 1.52996 * 59.98475 * 107.47078 * 6 4 2 8 8 H 1.08994 * 117.50408 * 107.50415 * 7 6 4 9 9 N 1.46508 * 117.49848 * 252.50030 * 7 6 4 10 10 C 1.34770 * 120.00128 * 223.74343 * 9 7 6 11 11 O 1.21693 * 120.00233 * 0.02562 * 10 9 7 12 12 C 1.46377 * 120.00195 * 179.97438 * 10 9 7 13 13 H 1.08000 * 119.99233 * 6.24928 * 12 10 9 14 14 C 1.40046 * 120.00166 * 186.24331 * 12 10 9 15 15 N 1.30673 * 120.00213 * 184.67344 * 14 12 10 16 16 Si 1.86808 * 120.00121 * 4.68345 * 14 12 10 17 17 H 1.48502 * 109.46909 * 179.97438 * 16 14 12 18 18 H 1.48492 * 109.47046 * 59.99545 * 16 14 12 19 19 H 1.48502 * 109.46597 * 299.99568 * 16 14 12 20 20 H 1.09000 * 109.47385 * 60.00054 * 1 2 3 21 21 H 1.09008 * 109.47216 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47412 * 299.99679 * 1 2 3 23 23 H 1.09002 * 109.46889 * 240.00362 * 2 1 3 24 24 H 1.09006 * 109.47029 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47062 * 300.00144 * 3 2 1 26 26 H 1.08993 * 109.47277 * 60.00388 * 3 2 1 27 27 H 1.08999 * 117.51449 * 359.97438 * 6 4 2 28 28 H 1.09006 * 117.49819 * 214.95267 * 6 4 2 29 29 H 0.97002 * 120.00025 * 43.74408 * 9 7 6 30 30 H 0.97000 * 120.00052 * 354.90796 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.4311 -0.5980 2.1448 6 6 2.7425 -2.0669 1.0520 7 6 3.5550 -0.8281 1.4342 8 1 3.9428 -0.7747 2.4514 9 7 4.4063 -0.2324 0.4013 10 6 5.6594 0.1602 0.7047 11 8 6.0840 0.0194 1.8364 12 6 6.5101 0.7549 -0.3274 13 1 6.1027 0.9721 -1.3038 14 6 7.8521 1.0423 -0.0487 15 7 8.5872 1.6561 -0.9378 16 14 8.5916 0.5479 1.5940 17 1 10.0170 0.9621 1.6398 18 1 8.4993 -0.9254 1.7550 19 1 7.8466 1.2137 2.6926 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6765 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.8410 -2.4388 0.0322 28 1 2.5955 -2.8284 1.8180 29 1 4.0680 -0.1204 -0.5009 30 1 8.2259 1.8469 -1.8176 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282676.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = -66.034784 kcal Electronic energy + Delta-G solvation = -12636.577667 eV Core-core repulsion = 10430.531693 eV Total energy + Delta-G solvation = -2206.045973 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50377 -38.67800 -35.14263 -34.62244 -33.10458 -28.40354 -27.87467 -23.90001 -23.23396 -21.96869 -20.33025 -20.15309 -17.61826 -17.00838 -16.12735 -15.52625 -15.36460 -15.30641 -14.58970 -14.33178 -14.26123 -13.77639 -13.05273 -13.00912 -12.69271 -12.39063 -12.14730 -12.02630 -11.75298 -11.56992 -11.37188 -11.19371 -10.88155 -10.11478 -9.33702 -9.22554 -7.15774 1.41978 1.53892 1.96091 2.16312 2.39420 2.78574 2.92271 3.34263 3.70591 3.95190 4.03491 4.21256 4.44598 4.47953 4.68279 4.82201 4.84967 4.91613 4.98773 5.08234 5.21698 5.28174 5.45138 5.47344 5.50309 5.51831 5.85545 6.06125 6.61697 7.12389 7.97889 8.09627 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055166 B = 0.009663 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.436617 B = 2896.992450 C = 3201.035224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.156 4.156 4 C -0.142 4.142 5 H 0.121 0.879 6 C -0.180 4.180 7 C 0.063 3.937 8 H 0.106 0.894 9 N -0.707 5.707 10 C 0.551 3.449 11 O -0.642 6.642 12 C -0.616 4.616 13 H 0.066 0.934 14 C 0.029 3.971 15 N -0.847 5.847 16 Si 1.163 2.837 17 H -0.306 1.306 18 H -0.296 1.296 19 H -0.296 1.296 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.399 0.601 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 -4.288 0.839 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.083 4.083 3 C -0.214 4.214 4 C -0.161 4.161 5 H 0.139 0.861 6 C -0.219 4.219 7 C -0.044 4.044 8 H 0.124 0.876 9 N -0.356 5.356 10 C 0.358 3.642 11 O -0.537 6.537 12 C -0.652 4.652 13 H 0.084 0.916 14 C -0.185 4.185 15 N -0.475 5.475 16 Si 0.994 3.006 17 H -0.236 1.236 18 H -0.223 1.223 19 H -0.224 1.224 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.234 0.766 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.267 -4.254 2.379 14.134 hybrid contribution -1.402 0.136 -1.697 2.205 sum -14.670 -4.118 0.682 15.252 Atomic orbital electron populations 1.21744 0.92947 1.02327 1.02218 1.20645 0.97124 0.95002 0.95503 1.21977 1.01206 0.96449 1.01733 1.22954 0.93239 0.99077 1.00836 0.86106 1.23598 1.03322 0.91569 1.03415 1.21514 0.89054 1.00444 0.93394 0.87609 1.45025 1.13403 1.64806 1.12348 1.18335 0.81302 0.76990 0.87609 1.90113 1.73287 1.65447 1.24891 1.22209 0.97758 1.45254 1.00016 0.91598 1.27814 0.94207 0.89468 1.07047 1.70661 1.40463 1.30095 1.06301 0.81931 0.71487 0.76354 0.70789 1.23650 1.22327 1.22419 0.92017 0.91775 0.92268 0.91711 0.93799 0.91947 0.92835 0.88610 0.86899 0.76567 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.17 71.98 0.66 -1.77 16 2 C -0.06 -1.53 2.43 -10.80 -0.03 -1.55 16 3 C -0.16 -4.29 8.86 71.98 0.64 -3.66 16 4 C -0.14 -3.67 5.15 -10.77 -0.06 -3.72 16 5 H 0.12 2.73 8.11 -2.39 -0.02 2.71 16 6 C -0.18 -4.80 10.11 30.62 0.31 -4.49 16 7 C 0.06 2.23 6.22 44.99 0.28 2.51 16 8 H 0.11 4.24 7.40 -2.39 -0.02 4.22 16 9 N -0.71 -30.00 3.78 -446.83 -1.69 -31.69 16 10 C 0.55 29.68 7.57 86.36 0.65 30.33 16 11 O -0.64 -37.54 11.64 -4.33 -0.05 -37.59 16 12 C -0.62 -35.29 9.96 24.83 0.25 -35.04 16 13 H 0.07 3.73 8.05 -2.91 -0.02 3.70 16 14 C 0.03 1.70 5.52 85.30 0.47 2.17 16 15 N -0.85 -49.35 13.64 21.84 0.30 -49.06 16 16 Si 1.16 61.69 25.99 68.60 1.78 63.47 16 17 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 18 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 19 H -0.30 -16.34 6.78 99.48 0.67 -15.66 16 20 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 1.57 7.61 -2.39 -0.02 1.55 16 24 H 0.04 1.51 5.39 -2.38 -0.01 1.49 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 27 H 0.10 2.48 8.05 -2.39 -0.02 2.47 16 28 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 29 H 0.40 15.31 6.79 -92.71 -0.63 14.68 16 30 H 0.28 15.60 8.72 -92.71 -0.81 14.79 16 Total: -1.00 -65.14 250.02 3.94 -61.19 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.42 Total: 8.90 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 3.18 Total: -15.23 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -1.39 Total: -80.74 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.05 Total: -37.59 kcal Atomic # 14 Polarization: 61.69 SS G_CDS: 1.78 Total: 63.47 kcal Total: -65.14 3.94 -61.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282676.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.840 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds