Wall clock time and date at job start Mon Mar 30 2020 01:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09001 * 115.54587 * 325.71700 * 4 2 1 6 6 C 1.52998 * 117.50032 * 111.39237 * 4 2 1 7 7 C 1.52998 * 59.99988 * 107.48866 * 6 4 2 8 8 H 1.09001 * 117.49885 * 252.50843 * 7 6 4 9 9 N 1.46501 * 117.49834 * 107.48947 * 7 6 4 10 10 C 1.34775 * 120.00405 * 136.37907 * 9 7 6 11 11 O 1.21691 * 119.99699 * 359.97438 * 10 9 7 12 12 C 1.46374 * 120.00427 * 180.02562 * 10 9 7 13 13 H 1.07997 * 119.99855 * 359.97438 * 12 10 9 14 14 C 1.40045 * 120.00103 * 179.97438 * 12 10 9 15 15 N 1.30672 * 120.00024 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00063 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47032 * 90.00188 * 16 14 12 18 18 H 1.48493 * 109.47057 * 210.00338 * 16 14 12 19 19 H 1.48503 * 109.46897 * 330.00269 * 16 14 12 20 20 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 21 21 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 23 23 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.09000 * 117.49782 * 214.98143 * 6 4 2 28 28 H 1.08999 * 117.49898 * 359.97438 * 6 4 2 29 29 H 0.97004 * 119.99723 * 316.37813 * 9 7 6 30 30 H 0.97003 * 120.00198 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4306 -0.5986 2.1446 6 6 2.7422 -2.0661 1.0514 7 6 3.5550 -0.8278 1.4345 8 1 4.1884 -0.3841 0.6663 9 7 4.0759 -0.7570 2.8019 10 6 5.3400 -0.3441 3.0210 11 8 6.0488 -0.0304 2.0829 12 6 5.8607 -0.2739 4.3872 13 1 5.2318 -0.5526 5.2197 14 6 7.1744 0.1547 4.6148 15 7 7.9352 0.4925 3.6075 16 14 7.8386 0.2450 6.3584 17 1 8.4638 -1.0532 6.7177 18 1 8.8544 1.3246 6.4458 19 1 6.7256 0.5352 7.2976 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.5950 -2.8282 1.8167 28 1 2.8405 -2.4373 0.0312 29 1 3.5110 -1.0074 3.5497 30 1 8.8450 0.7897 3.7651 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282678.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:51 Heat of formation + Delta-G solvation = -36.670297 kcal Electronic energy + Delta-G solvation = -12329.483311 eV Core-core repulsion = 10124.710678 eV Total energy + Delta-G solvation = -2204.772634 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.41232 -36.47567 -33.53223 -32.42961 -30.70136 -26.97162 -26.24315 -22.65486 -21.62335 -19.60143 -19.43516 -17.12968 -15.49137 -15.24673 -14.60832 -14.07513 -13.67921 -12.93139 -12.68197 -12.58234 -12.14171 -12.02385 -11.93065 -11.12738 -11.08518 -11.03477 -10.77430 -10.50396 -10.42944 -10.24040 -10.05306 -9.49026 -8.84445 -7.63170 -7.31690 -6.19603 -4.65358 3.14156 3.20852 3.24400 4.09113 4.27458 4.62595 4.64515 5.11116 5.17663 5.35482 5.49464 5.58527 5.77671 5.82831 5.87497 5.96414 6.03233 6.09875 6.16598 6.24304 6.41611 6.56560 6.62825 6.73650 7.42595 7.90927 8.10821 8.33011 9.01313 9.51866 10.59027 10.77140 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066762 B = 0.007407 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.301080 B = 3779.255769 C = 3850.783293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.173 4.173 5 H 0.097 0.903 6 C -0.207 4.207 7 C 0.120 3.880 8 H 0.125 0.875 9 N -0.736 5.736 10 C 0.556 3.444 11 O -0.579 6.579 12 C -0.545 4.545 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.767 5.767 16 Si 0.909 3.091 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.381 0.619 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -1.316 -2.836 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.203 4.203 4 C -0.193 4.193 5 H 0.115 0.885 6 C -0.247 4.247 7 C 0.012 3.988 8 H 0.143 0.857 9 N -0.387 5.387 10 C 0.360 3.640 11 O -0.462 6.462 12 C -0.582 4.582 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.733 3.267 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.189 1.189 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.213 0.787 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.065 -0.990 -3.572 10.726 hybrid contribution -0.071 -0.209 1.263 1.282 sum -10.136 -1.199 -2.309 10.464 Atomic orbital electron populations 1.21798 0.95485 1.01315 1.01274 1.20631 0.95052 0.96024 0.96300 1.21814 1.01988 0.95544 1.00969 1.22836 0.97250 0.99963 0.99213 0.88450 1.23547 1.07081 0.92039 1.02008 1.21303 0.90113 0.98159 0.89260 0.85698 1.45680 1.15804 1.73130 1.04109 1.18249 0.78551 0.76572 0.90588 1.90590 1.57164 1.53311 1.45125 1.20876 0.98257 1.47715 0.91338 0.91394 1.25708 0.96546 0.92918 0.98064 1.70021 1.06936 1.31252 1.31378 0.86357 0.79044 0.78386 0.82875 1.19718 1.20420 1.18910 0.93101 0.92901 0.92855 0.91484 0.91980 0.93320 0.92781 0.89418 0.89272 0.78723 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.17 37.16 0.34 -1.24 16 2 C -0.06 -0.83 3.07 -90.62 -0.28 -1.11 16 3 C -0.15 -2.06 9.03 37.16 0.34 -1.73 16 4 C -0.17 -2.68 5.07 -90.62 -0.46 -3.14 16 5 H 0.10 1.48 8.11 -51.93 -0.42 1.06 16 6 C -0.21 -3.34 10.10 -26.73 -0.27 -3.61 16 7 C 0.12 2.40 5.64 -67.93 -0.38 2.02 16 8 H 0.13 2.79 6.86 -51.93 -0.36 2.44 16 9 N -0.74 -16.95 5.56 -55.22 -0.31 -17.26 16 10 C 0.56 16.06 7.75 -12.99 -0.10 15.96 16 11 O -0.58 -18.94 14.59 5.20 0.08 -18.86 16 12 C -0.54 -15.55 9.54 -35.63 -0.34 -15.89 16 13 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 14 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -23.17 11.83 55.55 0.66 -22.51 16 16 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 24 H 0.06 1.02 7.29 -51.93 -0.38 0.64 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 29 H 0.38 7.77 8.81 -40.82 -0.36 7.41 16 30 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 259.74 15.07 3.91 3.91 Total: -1.00 -32.91 259.74 -6.36 -39.27 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.43 Total: 6.64 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.25 Total: -6.39 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.35 Total: -39.77 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.08 Total: -18.86 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.91 -6.36 -39.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282678.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.603 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds