Wall clock time and date at job start Mon Mar 30 2020 01:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09001 * 115.54587 * 325.71700 * 4 2 1 6 6 C 1.52998 * 117.50032 * 111.39237 * 4 2 1 7 7 C 1.52998 * 59.99988 * 107.48866 * 6 4 2 8 8 H 1.09001 * 117.49885 * 252.50843 * 7 6 4 9 9 N 1.46501 * 117.49834 * 107.48947 * 7 6 4 10 10 C 1.34775 * 120.00405 * 136.37907 * 9 7 6 11 11 O 1.21691 * 119.99699 * 359.97438 * 10 9 7 12 12 C 1.46374 * 120.00427 * 180.02562 * 10 9 7 13 13 H 1.07997 * 119.99855 * 359.97438 * 12 10 9 14 14 C 1.40045 * 120.00103 * 179.97438 * 12 10 9 15 15 N 1.30672 * 120.00024 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00063 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47032 * 90.00188 * 16 14 12 18 18 H 1.48493 * 109.47057 * 210.00338 * 16 14 12 19 19 H 1.48503 * 109.46897 * 330.00269 * 16 14 12 20 20 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 21 21 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 23 23 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.09000 * 117.49782 * 214.98143 * 6 4 2 28 28 H 1.08999 * 117.49898 * 359.97438 * 6 4 2 29 29 H 0.97004 * 119.99723 * 316.37813 * 9 7 6 30 30 H 0.97003 * 120.00198 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4306 -0.5986 2.1446 6 6 2.7422 -2.0661 1.0514 7 6 3.5550 -0.8278 1.4345 8 1 4.1884 -0.3841 0.6663 9 7 4.0759 -0.7570 2.8019 10 6 5.3400 -0.3441 3.0210 11 8 6.0488 -0.0304 2.0829 12 6 5.8607 -0.2739 4.3872 13 1 5.2318 -0.5526 5.2197 14 6 7.1744 0.1547 4.6148 15 7 7.9352 0.4925 3.6075 16 14 7.8386 0.2450 6.3584 17 1 8.4638 -1.0532 6.7177 18 1 8.8544 1.3246 6.4458 19 1 6.7256 0.5352 7.2976 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.5950 -2.8282 1.8167 28 1 2.8405 -2.4373 0.0312 29 1 3.5110 -1.0074 3.5497 30 1 8.8450 0.7897 3.7651 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282678.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:51 Heat of formation + Delta-G solvation = -59.716933 kcal Electronic energy + Delta-G solvation = -12330.482688 eV Core-core repulsion = 10124.710678 eV Total energy + Delta-G solvation = -2205.772011 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.03295 -38.36002 -35.07024 -34.50575 -32.48937 -28.40702 -27.97266 -23.91887 -23.31393 -21.43106 -20.79936 -19.12263 -17.51682 -16.92252 -16.13702 -15.51354 -15.12682 -14.70703 -14.53624 -13.95702 -13.56680 -13.49653 -13.00754 -12.98325 -12.80283 -12.65456 -12.13346 -12.06403 -12.00605 -11.62503 -11.55866 -10.93312 -10.87361 -9.89197 -9.15571 -8.31001 -6.88008 1.39724 1.41508 1.57075 2.23735 2.41094 2.94666 3.01314 3.62672 3.89914 3.92159 4.10838 4.26624 4.45023 4.49960 4.69669 4.84360 4.87209 4.96356 5.05126 5.09400 5.22698 5.29979 5.30658 5.45511 5.54673 5.86320 6.20764 6.30830 6.84400 7.52642 8.47449 8.65575 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066762 B = 0.007407 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.301080 B = 3779.255769 C = 3850.783293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.145 4.145 4 C -0.140 4.140 5 H 0.109 0.891 6 C -0.183 4.183 7 C 0.070 3.930 8 H 0.089 0.911 9 N -0.726 5.726 10 C 0.538 3.462 11 O -0.632 6.632 12 C -0.574 4.574 13 H 0.088 0.912 14 C 0.028 3.972 15 N -0.822 5.822 16 Si 1.001 2.999 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.248 1.248 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.395 0.605 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 -1.939 -1.660 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 C -0.202 4.202 4 C -0.160 4.160 5 H 0.127 0.873 6 C -0.222 4.222 7 C -0.037 4.037 8 H 0.107 0.893 9 N -0.377 5.377 10 C 0.343 3.657 11 O -0.519 6.519 12 C -0.611 4.611 13 H 0.106 0.894 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.820 3.180 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.172 1.172 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.229 0.771 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.004 -1.640 -2.404 12.351 hybrid contribution 0.439 -0.026 0.807 0.919 sum -11.565 -1.666 -1.597 11.793 Atomic orbital electron populations 1.21744 0.92850 1.02371 1.02267 1.20712 0.97104 0.95032 0.95305 1.21796 0.99762 0.96614 1.02014 1.22926 0.93385 0.99106 1.00551 0.87277 1.23605 1.03856 0.91592 1.03165 1.21327 0.92595 1.02837 0.86962 0.89273 1.45260 1.14342 1.72076 1.06025 1.18645 0.80003 0.76473 0.90576 1.90539 1.59148 1.55745 1.46510 1.21435 0.99479 1.48276 0.91864 0.89366 1.27016 0.96495 0.91518 1.03717 1.70194 1.07710 1.32383 1.34895 0.84977 0.78522 0.78864 0.75648 1.18514 1.19707 1.17171 0.91502 0.91808 0.92577 0.91036 0.95406 0.91001 0.93048 0.88262 0.87619 0.77129 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.17 71.98 0.66 -1.89 16 2 C -0.06 -1.57 3.07 -10.79 -0.03 -1.61 16 3 C -0.14 -4.02 9.03 71.98 0.65 -3.37 16 4 C -0.14 -4.12 5.07 -10.79 -0.05 -4.18 16 5 H 0.11 3.01 8.11 -2.39 -0.02 2.99 16 6 C -0.18 -5.59 10.10 30.59 0.31 -5.28 16 7 C 0.07 2.85 5.64 44.99 0.25 3.10 16 8 H 0.09 4.27 6.86 -2.39 -0.02 4.25 16 9 N -0.73 -34.11 5.56 -446.83 -2.48 -36.60 16 10 C 0.54 32.29 7.75 86.36 0.67 32.96 16 11 O -0.63 -43.68 14.59 -4.32 -0.06 -43.75 16 12 C -0.57 -33.23 9.54 24.83 0.24 -32.99 16 13 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 14 C 0.03 1.56 5.50 85.30 0.47 2.03 16 15 N -0.82 -51.26 11.83 21.83 0.26 -51.01 16 16 Si 1.00 41.33 29.56 68.60 2.03 43.36 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 20 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.75 7.90 -2.39 -0.02 1.73 16 24 H 0.03 0.94 7.29 -2.38 -0.02 0.92 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.11 2.89 8.05 -2.39 -0.02 2.87 16 29 H 0.39 15.99 8.81 -92.71 -0.82 15.17 16 30 H 0.28 15.47 8.29 -92.71 -0.77 14.70 16 Total: -1.00 -74.70 259.74 3.20 -71.49 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.30 Total: 27.71 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 3.16 Total: -11.22 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.23 Total: -87.60 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.06 Total: -43.75 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -74.70 3.20 -71.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282678.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.777 kcal (2) G-P(sol) polarization free energy of solvation -74.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds