Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47408 * 2 1 4 4 C 1.53000 * 109.47014 * 120.00080 * 2 1 3 5 5 H 1.08998 * 115.55097 * 274.41897 * 4 2 1 6 6 C 1.53003 * 117.49984 * 128.74218 * 4 2 1 7 7 C 1.53008 * 117.49952 * 60.08559 * 4 2 1 8 8 H 1.08993 * 117.50036 * 215.02786 * 7 4 2 9 9 N 1.46498 * 117.49514 * 0.02562 * 7 4 2 10 10 C 1.34778 * 119.99849 * 205.00068 * 9 7 4 11 11 O 1.21692 * 119.99867 * 359.97438 * 10 9 7 12 12 C 1.46372 * 120.00447 * 179.97438 * 10 9 7 13 13 H 1.08005 * 119.99971 * 353.94097 * 12 10 9 14 14 C 1.40044 * 120.00647 * 173.93695 * 12 10 9 15 15 N 1.30674 * 119.99793 * 6.15261 * 14 12 10 16 16 Si 1.86793 * 120.00389 * 186.14999 * 14 12 10 17 17 H 1.48503 * 109.46940 * 94.98499 * 16 14 12 18 18 H 1.48501 * 109.47531 * 214.98494 * 16 14 12 19 19 H 1.48501 * 109.47091 * 334.98704 * 16 14 12 20 20 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46896 * 300.00216 * 1 2 3 22 22 H 1.08999 * 109.46545 * 59.99669 * 1 2 3 23 23 H 1.08997 * 109.46896 * 239.99784 * 2 1 3 24 24 H 1.09000 * 109.47233 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47229 * 300.00174 * 3 2 1 26 26 H 1.09000 * 109.46550 * 60.00122 * 3 2 1 27 27 H 1.08997 * 117.49854 * 359.97438 * 6 4 2 28 28 H 1.09003 * 117.49972 * 144.99671 * 6 4 2 29 29 H 0.96996 * 120.00368 * 24.99633 * 9 7 4 30 30 H 0.96994 * 120.00645 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1253 -0.1064 2.1452 6 6 3.0763 -1.8295 1.0516 7 6 1.6374 -2.1859 1.4333 8 1 1.4574 -2.5344 2.4502 9 7 0.7935 -2.7904 0.3995 10 6 0.0054 -3.8410 0.7022 11 8 -0.0048 -4.2878 1.8341 12 6 -0.8382 -4.4447 -0.3305 13 1 -0.9042 -3.9899 -1.3079 14 6 -1.5597 -5.6120 -0.0513 15 7 -1.5761 -6.0954 1.1626 16 14 -2.4987 -6.4782 -1.4142 17 1 -1.6561 -7.5590 -1.9862 18 1 -3.7464 -7.0634 -0.8612 19 1 -2.8398 -5.5007 -2.4788 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.3944 -2.0450 0.0316 28 1 3.8434 -1.9437 1.8176 29 1 0.8019 -2.4345 -0.5028 30 1 -2.0761 -6.9037 1.3562 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282684.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -30.841652 kcal Electronic energy + Delta-G solvation = -12567.961477 eV Core-core repulsion = 10363.441593 eV Total energy + Delta-G solvation = -2204.519885 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.62113 -36.34285 -33.21973 -32.43454 -31.00620 -26.83478 -26.21728 -22.61194 -21.63483 -20.16863 -18.67249 -17.33137 -15.49798 -15.07243 -14.69023 -13.94100 -13.47400 -13.23589 -12.97449 -12.42598 -12.18754 -11.95386 -11.61237 -11.14562 -11.08735 -10.95340 -10.72673 -10.47169 -10.37734 -10.21854 -10.04958 -9.44387 -8.84337 -7.63479 -7.27903 -6.20977 -4.65334 3.13586 3.20841 3.24346 4.09186 4.27955 4.64791 4.71195 5.02053 5.23241 5.37328 5.50652 5.67787 5.77631 5.90083 5.93070 5.95849 6.10360 6.18514 6.20668 6.27629 6.49733 6.64015 6.69952 6.81082 7.42546 7.90097 8.10133 8.32849 9.01095 9.51084 10.58312 10.76492 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052695 B = 0.008895 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.227860 B = 3146.917700 C = 3453.299767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.173 4.173 5 H 0.099 0.901 6 C -0.208 4.208 7 C 0.118 3.882 8 H 0.125 0.875 9 N -0.732 5.732 10 C 0.556 3.444 11 O -0.579 6.579 12 C -0.546 4.546 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.908 3.092 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.080 0.920 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.383 0.617 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 9.539 -3.735 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.080 4.080 3 C -0.198 4.198 4 C -0.193 4.193 5 H 0.117 0.883 6 C -0.247 4.247 7 C 0.010 3.990 8 H 0.143 0.857 9 N -0.384 5.384 10 C 0.360 3.640 11 O -0.462 6.462 12 C -0.583 4.583 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.189 1.189 20 H 0.099 0.901 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.216 0.784 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.530 9.026 -2.770 10.472 hybrid contribution -0.273 -0.170 -1.095 1.141 sum 4.258 8.856 -3.865 10.559 Atomic orbital electron populations 1.22015 0.94722 1.04122 1.00628 1.20573 0.96016 0.95149 0.96253 1.21804 1.00575 0.96240 1.01223 1.22814 1.04781 0.92308 0.99407 0.88321 1.23523 0.94410 1.04507 1.02275 1.21291 0.90163 0.92148 0.95416 0.85744 1.45774 1.46134 1.35888 1.10642 1.18255 0.79047 0.77654 0.89022 1.90592 1.69628 1.63168 1.22817 1.20871 1.28123 1.10740 0.98519 0.91369 1.25699 0.95191 0.96687 0.95613 1.70023 1.32299 1.17923 1.19282 0.86357 0.79117 0.79809 0.81474 1.19794 1.20427 1.18863 0.90085 0.93188 0.93534 0.91664 0.93038 0.93116 0.92964 0.89351 0.89353 0.78402 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.86 37.16 0.33 -2.06 16 2 C -0.06 -0.86 2.43 -90.62 -0.22 -1.09 16 3 C -0.14 -1.64 9.18 37.16 0.34 -1.30 16 4 C -0.17 -2.69 5.15 -90.61 -0.47 -3.15 16 5 H 0.10 1.42 8.11 -51.93 -0.42 1.00 16 6 C -0.21 -3.33 10.11 -26.69 -0.27 -3.60 16 7 C 0.12 2.34 6.23 -67.89 -0.42 1.92 16 8 H 0.12 2.75 7.40 -51.93 -0.38 2.36 16 9 N -0.73 -16.47 3.78 -55.18 -0.21 -16.68 16 10 C 0.56 15.82 7.74 -12.99 -0.10 15.72 16 11 O -0.58 -18.81 14.61 5.20 0.08 -18.74 16 12 C -0.55 -15.40 9.53 -35.63 -0.34 -15.74 16 13 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 14 C 0.09 2.46 5.49 -17.37 -0.10 2.36 16 15 N -0.77 -23.04 11.85 55.55 0.66 -22.38 16 16 Si 0.91 20.13 29.56 -169.99 -5.03 15.11 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 20 H 0.08 1.47 5.40 -51.93 -0.28 1.19 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.93 7.61 -51.93 -0.39 0.53 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.38 7.72 6.79 -40.82 -0.28 7.44 16 30 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 254.21 15.07 3.83 3.83 Total: -1.00 -32.44 254.21 -6.17 -38.61 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.26 Total: 7.18 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.24 Total: -6.93 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.45 Total: -39.06 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.08 Total: -18.74 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.44 -6.17 -38.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282684.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.771 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds