Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47408 * 2 1 4 4 C 1.53000 * 109.47014 * 120.00080 * 2 1 3 5 5 H 1.08998 * 115.55097 * 274.41897 * 4 2 1 6 6 C 1.53003 * 117.49984 * 128.74218 * 4 2 1 7 7 C 1.53008 * 117.49952 * 60.08559 * 4 2 1 8 8 H 1.08993 * 117.50036 * 215.02786 * 7 4 2 9 9 N 1.46498 * 117.49514 * 0.02562 * 7 4 2 10 10 C 1.34778 * 119.99849 * 205.00068 * 9 7 4 11 11 O 1.21692 * 119.99867 * 359.97438 * 10 9 7 12 12 C 1.46372 * 120.00447 * 179.97438 * 10 9 7 13 13 H 1.08005 * 119.99971 * 353.94097 * 12 10 9 14 14 C 1.40044 * 120.00647 * 173.93695 * 12 10 9 15 15 N 1.30674 * 119.99793 * 6.15261 * 14 12 10 16 16 Si 1.86793 * 120.00389 * 186.14999 * 14 12 10 17 17 H 1.48503 * 109.46940 * 94.98499 * 16 14 12 18 18 H 1.48501 * 109.47531 * 214.98494 * 16 14 12 19 19 H 1.48501 * 109.47091 * 334.98704 * 16 14 12 20 20 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46896 * 300.00216 * 1 2 3 22 22 H 1.08999 * 109.46545 * 59.99669 * 1 2 3 23 23 H 1.08997 * 109.46896 * 239.99784 * 2 1 3 24 24 H 1.09000 * 109.47233 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47229 * 300.00174 * 3 2 1 26 26 H 1.09000 * 109.46550 * 60.00122 * 3 2 1 27 27 H 1.08997 * 117.49854 * 359.97438 * 6 4 2 28 28 H 1.09003 * 117.49972 * 144.99671 * 6 4 2 29 29 H 0.96996 * 120.00368 * 24.99633 * 9 7 4 30 30 H 0.96994 * 120.00645 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1253 -0.1064 2.1452 6 6 3.0763 -1.8295 1.0516 7 6 1.6374 -2.1859 1.4333 8 1 1.4574 -2.5344 2.4502 9 7 0.7935 -2.7904 0.3995 10 6 0.0054 -3.8410 0.7022 11 8 -0.0048 -4.2878 1.8341 12 6 -0.8382 -4.4447 -0.3305 13 1 -0.9042 -3.9899 -1.3079 14 6 -1.5597 -5.6120 -0.0513 15 7 -1.5761 -6.0954 1.1626 16 14 -2.4987 -6.4782 -1.4142 17 1 -1.6561 -7.5590 -1.9862 18 1 -3.7464 -7.0634 -0.8612 19 1 -2.8398 -5.5007 -2.4788 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.3944 -2.0450 0.0316 28 1 3.8434 -1.9437 1.8176 29 1 0.8019 -2.4345 -0.5028 30 1 -2.0761 -6.9037 1.3562 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282684.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -52.603868 kcal Electronic energy + Delta-G solvation = -12568.905158 eV Core-core repulsion = 10363.441593 eV Total energy + Delta-G solvation = -2205.463565 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.21868 -38.26854 -34.81902 -34.32591 -32.84603 -28.43497 -27.82555 -23.86472 -23.31052 -21.86106 -20.16684 -19.30252 -17.56335 -16.61223 -16.30103 -15.49163 -15.01343 -14.79965 -14.47538 -14.22803 -13.71609 -13.17221 -12.98733 -12.87175 -12.83217 -12.61702 -12.11349 -11.99597 -11.95161 -11.65589 -11.50352 -10.92738 -10.82530 -9.87805 -9.08399 -8.31062 -6.85989 1.39873 1.41030 1.57188 2.24039 2.42087 2.98352 3.03411 3.64275 3.76781 4.04183 4.11208 4.28558 4.50777 4.53910 4.73720 4.87593 4.90241 4.98130 5.06355 5.13714 5.25809 5.31318 5.33447 5.54929 5.56600 5.87535 6.21725 6.32746 6.85715 7.53862 8.48788 8.66602 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052695 B = 0.008895 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.227860 B = 3146.917700 C = 3453.299767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.142 4.142 5 H 0.115 0.885 6 C -0.184 4.184 7 C 0.067 3.933 8 H 0.090 0.910 9 N -0.717 5.717 10 C 0.540 3.460 11 O -0.634 6.634 12 C -0.573 4.573 13 H 0.087 0.913 14 C 0.029 3.971 15 N -0.822 5.822 16 Si 0.999 3.001 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.247 1.247 20 H 0.045 0.955 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.395 0.605 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 10.881 -5.803 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.081 4.081 3 C -0.192 4.192 4 C -0.161 4.161 5 H 0.133 0.867 6 C -0.222 4.222 7 C -0.041 4.041 8 H 0.108 0.892 9 N -0.369 5.369 10 C 0.345 3.655 11 O -0.521 6.521 12 C -0.610 4.610 13 H 0.105 0.895 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.818 3.182 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.171 1.171 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.230 0.770 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.085 10.434 -4.863 12.585 hybrid contribution -0.376 -0.499 -0.406 0.746 sum 4.708 9.935 -5.270 12.192 Atomic orbital electron populations 1.21969 0.95701 1.02037 1.01596 1.20634 0.95107 0.96984 0.95335 1.21745 1.01267 0.93991 1.02199 1.22928 1.02220 0.90182 1.00820 0.86694 1.23577 0.92523 1.02908 1.03232 1.21325 0.93158 0.96233 0.93373 0.89235 1.45290 1.45434 1.34452 1.11724 1.18614 0.79805 0.78668 0.88452 1.90541 1.71539 1.65272 1.24750 1.21407 1.28653 1.11677 0.99262 0.89483 1.26988 0.95879 0.97211 0.98576 1.70192 1.33729 1.18837 1.22396 0.84996 0.77286 0.78459 0.77483 1.18762 1.19696 1.17056 0.93565 0.93298 0.91566 0.91443 0.91888 0.91741 0.92504 0.88428 0.87513 0.76984 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 8.86 71.98 0.64 -3.87 16 2 C -0.06 -1.59 2.43 -10.79 -0.03 -1.61 16 3 C -0.13 -2.61 9.18 71.98 0.66 -1.95 16 4 C -0.14 -4.14 5.15 -10.79 -0.06 -4.20 16 5 H 0.12 3.02 8.11 -2.39 -0.02 3.00 16 6 C -0.18 -5.55 10.11 30.62 0.31 -5.24 16 7 C 0.07 2.68 6.23 45.02 0.28 2.96 16 8 H 0.09 4.21 7.40 -2.39 -0.02 4.19 16 9 N -0.72 -33.04 3.78 -446.70 -1.69 -34.73 16 10 C 0.54 31.99 7.74 86.36 0.67 32.66 16 11 O -0.63 -43.48 14.61 -4.32 -0.06 -43.54 16 12 C -0.57 -32.94 9.53 24.83 0.24 -32.71 16 13 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 14 C 0.03 1.61 5.49 85.30 0.47 2.08 16 15 N -0.82 -51.06 11.85 21.83 0.26 -50.80 16 16 Si 1.00 41.25 29.56 68.60 2.03 43.28 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 20 H 0.05 1.67 5.40 -2.39 -0.01 1.66 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.72 7.61 -2.39 -0.02 1.70 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 2.81 8.05 -2.39 -0.02 2.79 16 28 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.39 15.98 6.79 -92.71 -0.63 15.35 16 30 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 Total: -1.00 -73.59 254.21 4.21 -69.38 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.50 Total: 28.29 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 3.18 Total: -11.88 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -1.43 Total: -85.53 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.06 Total: -43.54 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -73.59 4.21 -69.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282684.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.777 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds