Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53894 * 113.58984 * 247.66622 * 3 2 1 5 5 C 1.53258 * 86.88455 * 220.43017 * 4 3 2 6 6 C 1.52457 * 128.58549 * 165.10917 * 5 4 3 7 7 C 1.52463 * 128.58243 * 245.05778 * 5 4 3 8 8 H 1.09000 * 117.51192 * 349.88222 * 7 5 4 9 9 N 1.46497 * 117.51310 * 134.94566 * 7 5 4 10 10 C 1.36929 * 120.00170 * 204.99609 * 9 7 5 11 11 H 1.08003 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.38816 * 120.00390 * 180.02562 * 10 9 7 13 13 N 1.31619 * 119.99551 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00051 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47165 * 60.00449 * 14 12 10 16 16 H 1.48502 * 109.47164 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47780 * 300.00250 * 14 12 10 18 18 C 1.53262 * 87.69220 * 25.08067 * 5 4 3 19 19 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 20 20 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 21 21 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 22 22 H 1.09002 * 112.83535 * 18.88542 * 3 2 1 23 23 H 1.09002 * 113.64031 * 334.92295 * 4 3 2 24 24 H 1.08997 * 113.64772 * 105.92852 * 4 3 2 25 25 H 1.09000 * 117.51028 * 225.04433 * 6 5 4 26 26 H 1.08999 * 117.51456 * 10.15204 * 6 5 4 27 27 H 0.97005 * 119.99669 * 25.00316 * 9 7 5 28 28 H 0.97000 * 119.99463 * 180.02562 * 13 12 10 29 29 H 1.08999 * 113.64614 * 220.41987 * 18 5 4 30 30 H 1.09001 * 113.64464 * 89.42005 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7502 1.6502 -1.3045 5 6 3.8211 2.3055 -0.4256 6 6 5.2346 2.7309 -0.8070 7 6 4.2154 3.7760 -0.3445 8 1 3.8065 4.4493 -1.0979 9 7 4.3976 4.3553 0.9887 10 6 4.2424 5.7027 1.1769 11 1 3.9854 6.3384 0.3425 12 6 4.4155 6.2517 2.4401 13 7 4.7293 5.4770 3.4568 14 14 4.2046 8.0899 2.6965 15 1 2.8245 8.4872 2.3188 16 1 4.4410 8.4208 4.1247 17 1 5.1799 8.8230 1.8500 18 6 3.3764 1.3713 0.7051 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.3138 2.0785 0.3252 23 1 3.1066 0.7757 -1.8490 24 1 2.2132 2.3556 -1.9386 25 1 6.0404 2.4747 -0.1192 26 1 5.4965 2.7168 -1.8650 27 1 4.6282 3.7842 1.7382 28 1 4.8499 5.8606 4.3396 29 1 3.3414 1.8533 1.6821 30 1 3.9072 0.4194 0.7199 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282711.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = 13.110532 kcal Electronic energy + Delta-G solvation = -12393.985597 eV Core-core repulsion = 10191.371622 eV Total energy + Delta-G solvation = -2202.613975 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.30302 -36.78636 -34.05836 -32.03187 -29.38940 -26.51014 -25.33752 -23.82595 -21.81986 -20.64872 -17.96646 -17.12399 -16.40840 -15.36703 -15.05318 -14.70164 -14.04626 -13.85252 -12.92004 -12.71944 -12.16574 -11.95184 -11.54074 -11.29676 -10.98097 -10.94571 -10.86539 -10.36068 -10.23281 -10.04792 -9.80040 -9.20083 -8.93241 -8.73667 -6.94439 -5.87226 -3.15675 3.39342 3.43819 3.45096 3.97961 4.47895 4.69926 4.94442 5.08863 5.19561 5.33708 5.41761 5.48396 5.50332 5.67513 5.69261 5.90080 6.04675 6.14260 6.16751 6.39544 6.45573 6.54489 6.67378 6.81280 6.91956 7.48383 7.62484 8.31091 9.41923 9.97784 10.32500 11.34613 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045944 B = 0.008132 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.286910 B = 3442.429738 C = 3709.223645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.067 3.933 4 C -0.108 4.108 5 C -0.202 4.202 6 C -0.208 4.208 7 C 0.179 3.821 8 H 0.103 0.897 9 N -0.684 5.684 10 C -0.252 4.252 11 H 0.075 0.925 12 C -0.009 4.009 13 N -0.929 5.929 14 Si 0.913 3.087 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.284 1.284 18 C -0.090 4.090 19 H 0.038 0.962 20 H 0.040 0.960 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.388 0.612 28 H 0.259 0.741 29 H 0.075 0.925 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -7.492 -7.308 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.009 3.991 4 C -0.146 4.146 5 C -0.206 4.206 6 C -0.250 4.250 7 C 0.064 3.936 8 H 0.120 0.880 9 N -0.318 5.318 10 C -0.382 4.382 11 H 0.093 0.907 12 C -0.205 4.205 13 N -0.576 5.576 14 Si 0.743 3.257 15 H -0.211 1.211 16 H -0.216 1.216 17 H -0.210 1.210 18 C -0.128 4.128 19 H 0.057 0.943 20 H 0.059 0.941 21 H 0.098 0.902 22 H 0.106 0.894 23 H 0.099 0.901 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.223 0.777 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.546 -7.399 -7.219 11.731 hybrid contribution -0.155 0.837 0.418 0.949 sum -5.701 -6.562 -6.801 11.036 Atomic orbital electron populations 1.22725 0.81924 1.02055 0.99851 1.87906 1.19084 1.28533 1.94699 1.23637 0.94019 0.84052 0.97376 1.22892 0.96161 0.99414 0.96140 1.22657 0.97354 1.02030 0.98548 1.23482 0.91877 1.09262 1.00357 1.20805 0.96958 0.85868 0.89990 0.87968 1.41995 1.80184 1.05951 1.03628 1.19268 1.41083 0.83694 0.94197 0.90737 1.24815 1.01807 0.98294 0.95631 1.69664 1.53529 1.34392 1.00001 0.86190 0.77980 0.84652 0.76885 1.21093 1.21563 1.21015 1.22513 0.93855 0.98357 0.98042 0.94340 0.94127 0.90239 0.89423 0.90057 0.91952 0.89548 0.89986 0.77734 0.93165 0.90615 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.85 101.05 1.10 1.46 16 2 O -0.38 -5.97 10.71 -35.23 -0.38 -6.35 16 3 C 0.07 1.08 4.31 -25.80 -0.11 0.97 16 4 C -0.11 -1.69 7.93 -26.13 -0.21 -1.90 16 5 C -0.20 -3.65 3.01 -154.79 -0.47 -4.12 16 6 C -0.21 -3.83 10.46 -26.94 -0.28 -4.11 16 7 C 0.18 3.71 6.62 -68.14 -0.45 3.26 16 8 H 0.10 2.03 8.12 -51.93 -0.42 1.61 16 9 N -0.68 -17.41 5.59 -53.63 -0.30 -17.71 16 10 C -0.25 -6.95 9.98 -15.06 -0.15 -7.10 16 11 H 0.07 1.96 7.82 -52.48 -0.41 1.55 16 12 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 13 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 14 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.09 -1.61 7.91 -26.13 -0.21 -1.82 16 19 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 20 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.09 1.43 7.87 -51.93 -0.41 1.02 16 23 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.39 10.48 7.72 -40.82 -0.32 10.17 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.08 1.49 7.84 -51.93 -0.41 1.08 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -29.50 259.63 -6.42 -35.92 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.48 Total: 7.98 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.87 Total: -13.69 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.42 Total: -44.79 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.38 Total: -6.35 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.50 -6.42 -35.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282711.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.033 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds