Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53894 * 113.58984 * 247.66622 * 3 2 1 5 5 C 1.53258 * 86.88455 * 220.43017 * 4 3 2 6 6 C 1.52457 * 128.58549 * 165.10917 * 5 4 3 7 7 C 1.52463 * 128.58243 * 245.05778 * 5 4 3 8 8 H 1.09000 * 117.51192 * 349.88222 * 7 5 4 9 9 N 1.46497 * 117.51310 * 134.94566 * 7 5 4 10 10 C 1.36929 * 120.00170 * 204.99609 * 9 7 5 11 11 H 1.08003 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.38816 * 120.00390 * 180.02562 * 10 9 7 13 13 N 1.31619 * 119.99551 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00051 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47165 * 60.00449 * 14 12 10 16 16 H 1.48502 * 109.47164 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47780 * 300.00250 * 14 12 10 18 18 C 1.53262 * 87.69220 * 25.08067 * 5 4 3 19 19 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 20 20 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 21 21 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 22 22 H 1.09002 * 112.83535 * 18.88542 * 3 2 1 23 23 H 1.09002 * 113.64031 * 334.92295 * 4 3 2 24 24 H 1.08997 * 113.64772 * 105.92852 * 4 3 2 25 25 H 1.09000 * 117.51028 * 225.04433 * 6 5 4 26 26 H 1.08999 * 117.51456 * 10.15204 * 6 5 4 27 27 H 0.97005 * 119.99669 * 25.00316 * 9 7 5 28 28 H 0.97000 * 119.99463 * 180.02562 * 13 12 10 29 29 H 1.08999 * 113.64614 * 220.41987 * 18 5 4 30 30 H 1.09001 * 113.64464 * 89.42005 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7502 1.6502 -1.3045 5 6 3.8211 2.3055 -0.4256 6 6 5.2346 2.7309 -0.8070 7 6 4.2154 3.7760 -0.3445 8 1 3.8065 4.4493 -1.0979 9 7 4.3976 4.3553 0.9887 10 6 4.2424 5.7027 1.1769 11 1 3.9854 6.3384 0.3425 12 6 4.4155 6.2517 2.4401 13 7 4.7293 5.4770 3.4568 14 14 4.2046 8.0899 2.6965 15 1 2.8245 8.4872 2.3188 16 1 4.4410 8.4208 4.1247 17 1 5.1799 8.8230 1.8500 18 6 3.3764 1.3713 0.7051 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.3138 2.0785 0.3252 23 1 3.1066 0.7757 -1.8490 24 1 2.2132 2.3556 -1.9386 25 1 6.0404 2.4747 -0.1192 26 1 5.4965 2.7168 -1.8650 27 1 4.6282 3.7842 1.7382 28 1 4.8499 5.8606 4.3396 29 1 3.3414 1.8533 1.6821 30 1 3.9072 0.4194 0.7199 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282711.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -6.009857 kcal Electronic energy + Delta-G solvation = -12394.814719 eV Core-core repulsion = 10191.371622 eV Total energy + Delta-G solvation = -2203.443097 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.68743 -38.11508 -35.83757 -33.75528 -31.28385 -27.50771 -26.71255 -25.84265 -23.13341 -22.28576 -19.66742 -18.92036 -17.61808 -16.92721 -16.52221 -16.06932 -15.54250 -15.52070 -14.59590 -14.17212 -13.61136 -13.31323 -13.00783 -12.89478 -12.66140 -12.65656 -12.22660 -12.11249 -11.97029 -11.87616 -11.33746 -10.71843 -10.44927 -10.34317 -8.90243 -7.99884 -5.28827 1.47570 1.50836 1.57189 2.52136 2.78068 3.15614 3.45010 3.51047 3.73896 3.83029 3.93320 4.16298 4.28276 4.45050 4.57544 4.60211 4.83642 4.84248 4.85520 4.87689 5.00960 5.14625 5.22576 5.31812 5.44136 5.49609 6.21396 6.32933 7.26896 8.00062 8.24305 9.23156 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045944 B = 0.008132 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.286910 B = 3442.429738 C = 3709.223645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.073 3.927 4 C -0.093 4.093 5 C -0.191 4.191 6 C -0.192 4.192 7 C 0.146 3.854 8 H 0.112 0.888 9 N -0.703 5.703 10 C -0.253 4.253 11 H 0.084 0.916 12 C -0.073 4.073 13 N -0.970 5.970 14 Si 0.980 3.020 15 H -0.275 1.275 16 H -0.296 1.296 17 H -0.275 1.275 18 C -0.099 4.099 19 H 0.052 0.948 20 H 0.041 0.959 21 H 0.102 0.898 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.375 0.625 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.455 -7.746 -9.129 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.015 3.985 4 C -0.130 4.130 5 C -0.194 4.194 6 C -0.233 4.233 7 C 0.034 3.966 8 H 0.129 0.871 9 N -0.337 5.337 10 C -0.384 4.384 11 H 0.102 0.898 12 C -0.266 4.266 13 N -0.619 5.619 14 Si 0.808 3.192 15 H -0.201 1.201 16 H -0.222 1.222 17 H -0.201 1.201 18 C -0.136 4.136 19 H 0.070 0.930 20 H 0.060 0.940 21 H 0.120 0.880 22 H 0.101 0.899 23 H 0.115 0.885 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.207 0.793 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.391 -7.675 -9.111 13.519 hybrid contribution 0.069 0.803 0.921 1.224 sum -6.322 -6.872 -8.190 12.421 Atomic orbital electron populations 1.22973 0.79872 1.03841 1.00583 1.87872 1.21312 1.27777 1.94774 1.23471 0.93181 0.84547 0.97282 1.22854 0.94597 0.99837 0.95742 1.22608 0.97761 0.99473 0.99582 1.23443 0.91553 1.06657 1.01632 1.21076 0.99647 0.87456 0.88399 0.87076 1.42094 1.81225 1.05309 1.05061 1.19710 1.39330 0.84954 0.94440 0.89807 1.25670 1.02647 1.02710 0.95524 1.69832 1.55753 1.36152 1.00185 0.85118 0.78299 0.79448 0.76309 1.20105 1.22204 1.20089 1.22576 0.95802 0.98438 0.96812 0.92981 0.94034 0.88011 0.89862 0.88500 0.90264 0.90836 0.87067 0.79319 0.93801 0.93457 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.85 113.37 1.23 1.72 16 2 O -0.40 -11.54 10.71 -148.98 -1.60 -13.14 16 3 C 0.07 2.24 4.31 31.19 0.13 2.38 16 4 C -0.09 -2.61 7.93 30.98 0.25 -2.37 16 5 C -0.19 -6.61 3.01 -52.37 -0.16 -6.76 16 6 C -0.19 -6.73 10.46 30.46 0.32 -6.41 16 7 C 0.15 5.95 6.62 44.86 0.30 6.25 16 8 H 0.11 4.26 8.12 -2.39 -0.02 4.24 16 9 N -0.70 -36.32 5.59 -323.59 -1.81 -38.13 16 10 C -0.25 -14.05 9.98 84.04 0.84 -13.21 16 11 H 0.08 4.37 7.82 -2.91 -0.02 4.35 16 12 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 13 N -0.97 -59.61 13.06 21.65 0.28 -59.32 16 14 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 C -0.10 -3.48 7.91 30.98 0.25 -3.24 16 19 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.08 2.62 7.87 -2.39 -0.02 2.60 16 23 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 2.77 8.14 -2.39 -0.02 2.76 16 26 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.37 20.96 7.72 -92.70 -0.72 20.24 16 28 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 29 H 0.05 1.92 7.84 -2.39 -0.02 1.90 16 30 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -63.09 259.63 2.92 -60.17 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.40 Total: 28.11 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 3.62 Total: -25.36 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -1.53 Total: -97.45 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.60 Total: -13.14 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -63.09 2.92 -60.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282711.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.158 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds