Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00342 * 2 1 4 4 C 1.53890 * 113.58862 * 110.78420 * 3 2 1 5 5 C 1.53419 * 86.82533 * 89.71408 * 4 3 2 6 6 C 1.52460 * 128.52055 * 245.01794 * 5 4 3 7 7 C 1.52460 * 128.60798 * 165.09850 * 5 4 3 8 8 H 1.08996 * 117.51064 * 10.06431 * 7 5 4 9 9 N 1.46502 * 117.51374 * 224.96037 * 7 5 4 10 10 C 1.36940 * 119.99797 * 154.99665 * 9 7 5 11 11 H 1.07998 * 120.00427 * 0.02562 * 10 9 7 12 12 C 1.38810 * 119.99849 * 179.97438 * 10 9 7 13 13 N 1.31621 * 119.99709 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99988 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47030 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47131 * 120.00240 * 14 12 10 17 17 H 1.48504 * 109.46920 * 239.99921 * 14 12 10 18 18 C 1.53255 * 87.71922 * 25.01939 * 5 4 3 19 19 H 1.08998 * 109.47177 * 299.99787 * 1 2 3 20 20 H 1.09002 * 109.47394 * 59.99512 * 1 2 3 21 21 H 1.08999 * 109.47492 * 180.02562 * 1 2 3 22 22 H 1.09002 * 112.82920 * 339.66864 * 3 2 1 23 23 H 1.08994 * 113.64879 * 204.18565 * 4 3 2 24 24 H 1.09008 * 113.64580 * 335.19268 * 4 3 2 25 25 H 1.09000 * 117.51442 * 349.79953 * 6 5 4 26 26 H 1.09000 * 117.51391 * 134.86800 * 6 5 4 27 27 H 0.96994 * 119.99826 * 335.00015 * 9 7 5 28 28 H 0.97008 * 119.99555 * 180.02562 * 13 12 10 29 29 H 1.09009 * 113.64453 * 220.48821 * 18 5 4 30 30 H 1.08997 * 113.72782 * 89.49596 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.7179 1.6644 1.3185 5 6 3.9853 1.0551 0.7050 6 6 4.7573 -0.1809 1.1529 7 6 5.4299 1.1946 1.1719 8 1 5.6026 1.6572 2.1435 9 7 6.4474 1.4645 0.1529 10 6 7.6145 2.0910 0.5000 11 1 7.7852 2.3858 1.5248 12 6 8.5788 2.3463 -0.4654 13 7 8.3710 1.9866 -1.7143 14 14 10.1713 3.2003 0.0081 15 1 10.1591 3.4994 1.4627 16 1 11.3206 2.3140 -0.3059 17 1 10.2998 4.4670 -0.7562 18 6 3.3924 1.3641 -0.6740 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.3217 2.0749 -0.3491 23 1 2.7910 2.7370 1.4975 24 1 2.3408 1.1145 2.1809 25 1 4.4877 -0.6229 2.1121 26 1 5.0714 -0.8850 0.3824 27 1 6.2942 1.1995 -0.7675 28 1 9.0451 2.1647 -2.3888 29 1 3.5552 0.5738 -1.4069 30 1 3.6529 2.3527 -1.0520 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = 17.162554 kcal Electronic energy + Delta-G solvation = -12391.231090 eV Core-core repulsion = 10188.792824 eV Total energy + Delta-G solvation = -2202.438266 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.36605 -36.66079 -34.02273 -32.00466 -29.28323 -26.55600 -25.33886 -23.73786 -22.12857 -20.39534 -17.98261 -17.25038 -16.19993 -15.37507 -15.02862 -14.68375 -13.94353 -13.74529 -13.25402 -12.72780 -12.04588 -12.01842 -11.62153 -11.22679 -11.07829 -10.87397 -10.81466 -10.14390 -10.05321 -10.00379 -9.75983 -9.27348 -9.00119 -8.60011 -6.83361 -5.81732 -3.09104 3.41788 3.47481 3.50091 3.84793 4.53437 4.69883 4.93101 5.05876 5.15538 5.34895 5.40982 5.42217 5.52947 5.63573 5.73396 5.94121 6.09154 6.12918 6.21813 6.40018 6.52305 6.56234 6.70779 6.85271 7.00880 7.44659 7.68742 8.37091 9.47840 10.05689 10.40396 11.40530 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.081612 B = 0.007184 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.004547 B = 3896.351500 C = 3994.262441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.065 3.935 4 C -0.115 4.115 5 C -0.190 4.190 6 C -0.192 4.192 7 C 0.161 3.839 8 H 0.100 0.900 9 N -0.686 5.686 10 C -0.246 4.246 11 H 0.075 0.925 12 C -0.012 4.012 13 N -0.931 5.931 14 Si 0.911 3.089 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.291 1.291 18 C -0.091 4.091 19 H 0.038 0.962 20 H 0.038 0.962 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.388 0.612 28 H 0.256 0.744 29 H 0.068 0.932 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.300 -1.179 3.997 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.007 3.993 4 C -0.153 4.153 5 C -0.193 4.193 6 C -0.233 4.233 7 C 0.047 3.953 8 H 0.118 0.882 9 N -0.320 5.320 10 C -0.377 4.377 11 H 0.093 0.907 12 C -0.208 4.208 13 N -0.578 5.578 14 Si 0.742 3.258 15 H -0.204 1.204 16 H -0.217 1.217 17 H -0.218 1.218 18 C -0.129 4.129 19 H 0.056 0.944 20 H 0.057 0.943 21 H 0.100 0.900 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.222 0.778 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.963 -1.222 4.041 13.633 hybrid contribution 0.489 0.430 -0.167 0.672 sum -12.474 -0.792 3.874 13.086 Atomic orbital electron populations 1.22751 0.81909 1.02284 0.99591 1.87935 1.18726 1.27067 1.94594 1.23074 0.94319 0.84229 0.97697 1.22925 0.95336 1.00252 0.96775 1.22662 0.95139 1.05107 0.96405 1.23449 1.05662 0.93018 1.01170 1.20878 0.85539 0.95035 0.93857 0.88248 1.41974 1.15335 1.67943 1.06719 1.19372 0.93411 1.30433 0.94454 0.90719 1.24801 0.98978 1.01587 0.95433 1.69690 1.35287 1.52130 1.00691 0.86057 0.83353 0.78836 0.77578 1.20404 1.21750 1.21777 1.22506 0.92272 1.02181 0.95892 0.94378 0.94323 0.89993 0.91631 0.89558 0.91707 0.90199 0.89684 0.77827 0.93376 0.91300 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.85 101.05 1.10 1.44 16 2 O -0.36 -5.62 10.64 -35.23 -0.37 -6.00 16 3 C 0.06 0.97 4.35 -25.81 -0.11 0.86 16 4 C -0.12 -1.77 7.94 -26.05 -0.21 -1.97 16 5 C -0.19 -3.52 2.96 -154.71 -0.46 -3.98 16 6 C -0.19 -3.72 10.46 -26.94 -0.28 -4.00 16 7 C 0.16 3.46 6.62 -68.14 -0.45 3.00 16 8 H 0.10 2.05 8.12 -51.93 -0.42 1.63 16 9 N -0.69 -17.87 5.60 -53.63 -0.30 -18.17 16 10 C -0.25 -6.92 9.98 -15.06 -0.15 -7.07 16 11 H 0.07 2.02 7.82 -52.49 -0.41 1.61 16 12 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 13 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 14 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 C -0.09 -1.60 7.91 -26.14 -0.21 -1.81 16 19 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 20 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 23 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.39 10.71 8.02 -40.82 -0.33 10.38 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 30 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 260.17 15.07 3.92 3.92 Total: -1.00 -30.59 260.17 -6.43 -37.02 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.51 Total: 7.42 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -0.87 Total: -13.96 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.42 Total: -45.74 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.37 Total: -6.00 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.59 -6.43 -37.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.185 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds