Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00342 * 2 1 4 4 C 1.53890 * 113.58862 * 110.78420 * 3 2 1 5 5 C 1.53419 * 86.82533 * 89.71408 * 4 3 2 6 6 C 1.52460 * 128.52055 * 245.01794 * 5 4 3 7 7 C 1.52460 * 128.60798 * 165.09850 * 5 4 3 8 8 H 1.08996 * 117.51064 * 10.06431 * 7 5 4 9 9 N 1.46502 * 117.51374 * 224.96037 * 7 5 4 10 10 C 1.36940 * 119.99797 * 154.99665 * 9 7 5 11 11 H 1.07998 * 120.00427 * 0.02562 * 10 9 7 12 12 C 1.38810 * 119.99849 * 179.97438 * 10 9 7 13 13 N 1.31621 * 119.99709 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99988 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47030 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47131 * 120.00240 * 14 12 10 17 17 H 1.48504 * 109.46920 * 239.99921 * 14 12 10 18 18 C 1.53255 * 87.71922 * 25.01939 * 5 4 3 19 19 H 1.08998 * 109.47177 * 299.99787 * 1 2 3 20 20 H 1.09002 * 109.47394 * 59.99512 * 1 2 3 21 21 H 1.08999 * 109.47492 * 180.02562 * 1 2 3 22 22 H 1.09002 * 112.82920 * 339.66864 * 3 2 1 23 23 H 1.08994 * 113.64879 * 204.18565 * 4 3 2 24 24 H 1.09008 * 113.64580 * 335.19268 * 4 3 2 25 25 H 1.09000 * 117.51442 * 349.79953 * 6 5 4 26 26 H 1.09000 * 117.51391 * 134.86800 * 6 5 4 27 27 H 0.96994 * 119.99826 * 335.00015 * 9 7 5 28 28 H 0.97008 * 119.99555 * 180.02562 * 13 12 10 29 29 H 1.09009 * 113.64453 * 220.48821 * 18 5 4 30 30 H 1.08997 * 113.72782 * 89.49596 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.7179 1.6644 1.3185 5 6 3.9853 1.0551 0.7050 6 6 4.7573 -0.1809 1.1529 7 6 5.4299 1.1946 1.1719 8 1 5.6026 1.6572 2.1435 9 7 6.4474 1.4645 0.1529 10 6 7.6145 2.0910 0.5000 11 1 7.7852 2.3858 1.5248 12 6 8.5788 2.3463 -0.4654 13 7 8.3710 1.9866 -1.7143 14 14 10.1713 3.2003 0.0081 15 1 10.1591 3.4994 1.4627 16 1 11.3206 2.3140 -0.3059 17 1 10.2998 4.4670 -0.7562 18 6 3.3924 1.3641 -0.6740 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.3217 2.0749 -0.3491 23 1 2.7910 2.7370 1.4975 24 1 2.3408 1.1145 2.1809 25 1 4.4877 -0.6229 2.1121 26 1 5.0714 -0.8850 0.3824 27 1 6.2942 1.1995 -0.7675 28 1 9.0451 2.1647 -2.3888 29 1 3.5552 0.5738 -1.4069 30 1 3.6529 2.3527 -1.0520 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -3.120646 kcal Electronic energy + Delta-G solvation = -12392.110636 eV Core-core repulsion = 10188.792824 eV Total energy + Delta-G solvation = -2203.317812 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.70434 -37.99350 -35.79822 -33.75602 -31.22818 -27.45183 -26.67540 -25.81429 -23.39649 -22.09682 -19.57343 -19.08322 -17.44778 -16.87679 -16.47937 -15.99721 -15.57745 -15.33179 -14.64841 -14.39236 -13.64228 -13.24392 -13.10956 -12.88789 -12.73075 -12.51423 -12.19046 -12.10200 -11.88773 -11.57154 -11.32317 -10.66527 -10.47512 -10.37447 -8.82334 -7.98706 -5.26908 1.47901 1.49055 1.59730 2.53242 2.78086 3.11969 3.45280 3.49856 3.78925 3.89452 4.00049 4.25983 4.35763 4.48162 4.61065 4.62288 4.84166 4.87255 4.88306 4.90614 4.98737 5.17389 5.22040 5.31077 5.48465 5.51285 6.23225 6.40423 7.28303 8.02689 8.27207 9.25027 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.081612 B = 0.007184 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.004547 B = 3896.351500 C = 3994.262441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.079 3.921 4 C -0.104 4.104 5 C -0.181 4.181 6 C -0.183 4.183 7 C 0.129 3.871 8 H 0.107 0.893 9 N -0.703 5.703 10 C -0.249 4.249 11 H 0.083 0.917 12 C -0.075 4.075 13 N -0.971 5.971 14 Si 0.980 3.020 15 H -0.263 1.263 16 H -0.293 1.293 17 H -0.291 1.291 18 C -0.103 4.103 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.095 0.905 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.374 0.626 28 H 0.253 0.747 29 H 0.050 0.950 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.754 -0.675 5.371 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.021 3.979 4 C -0.141 4.141 5 C -0.184 4.184 6 C -0.224 4.224 7 C 0.018 3.982 8 H 0.124 0.876 9 N -0.338 5.338 10 C -0.380 4.380 11 H 0.100 0.900 12 C -0.267 4.267 13 N -0.621 5.621 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.220 1.220 17 H -0.218 1.218 18 C -0.141 4.141 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.120 0.880 24 H 0.096 0.904 25 H 0.121 0.879 26 H 0.085 0.915 27 H 0.206 0.794 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.468 -0.730 5.471 15.485 hybrid contribution 0.827 0.201 -0.570 1.024 sum -13.641 -0.529 4.901 14.505 Atomic orbital electron populations 1.23001 0.79486 1.03717 1.00972 1.87895 1.21414 1.27266 1.94666 1.22922 0.93434 0.85093 0.96416 1.22960 0.92659 1.01093 0.97419 1.22826 0.94231 1.03389 0.97983 1.23356 1.05074 0.92175 1.01806 1.21118 0.86636 0.96987 0.93479 0.87558 1.42073 1.16138 1.68595 1.06957 1.19789 0.94098 1.29373 0.94746 0.89953 1.25666 1.02512 1.03133 0.95439 1.69852 1.36354 1.54160 1.01776 0.84972 0.78889 0.77282 0.77974 1.18686 1.22033 1.21847 1.22591 0.95021 1.01296 0.95180 0.92813 0.93048 0.88700 0.88659 0.87955 0.90405 0.87863 0.91493 0.79414 0.93841 0.93101 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.85 113.37 1.23 1.68 16 2 O -0.39 -11.11 10.64 -148.98 -1.58 -12.70 16 3 C 0.08 2.15 4.35 31.19 0.14 2.29 16 4 C -0.10 -2.86 7.94 31.04 0.25 -2.62 16 5 C -0.18 -6.52 2.96 -52.32 -0.15 -6.68 16 6 C -0.18 -7.00 10.46 30.46 0.32 -6.68 16 7 C 0.13 5.52 6.62 44.85 0.30 5.81 16 8 H 0.11 4.31 8.12 -2.39 -0.02 4.29 16 9 N -0.70 -37.40 5.60 -323.59 -1.81 -39.21 16 10 C -0.25 -14.12 9.98 84.03 0.84 -13.28 16 11 H 0.08 4.43 7.82 -2.91 -0.02 4.41 16 12 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 13 N -0.97 -60.56 13.06 21.65 0.28 -60.27 16 14 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 C -0.10 -3.58 7.91 30.98 0.25 -3.33 16 19 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 20 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 21 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.10 2.06 7.88 -2.39 -0.02 2.04 16 23 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.37 21.45 8.02 -92.71 -0.74 20.71 16 28 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -65.89 260.17 2.91 -62.98 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.37 Total: 27.53 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 3.62 Total: -26.73 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -1.53 Total: -99.48 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.58 Total: -12.70 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -65.89 2.91 -62.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.861 kcal (2) G-P(sol) polarization free energy of solvation -65.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds