Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47136 * 2 1 4 4 C 1.53008 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.77850 * 46.27514 * 4 3 2 6 6 C 1.53751 * 113.55335 * 177.13373 * 4 3 2 7 7 C 1.53496 * 83.25931 * 140.98619 * 6 4 3 8 8 N 1.47069 * 113.46555 * 275.49643 * 4 3 2 9 9 C 1.34777 * 136.05890 * 38.13845 * 8 4 3 10 10 O 1.21683 * 120.00011 * 359.62468 * 9 8 4 11 11 C 1.46373 * 120.00143 * 179.62524 * 9 8 4 12 12 H 1.08001 * 119.99611 * 0.02562 * 11 9 8 13 13 C 1.40045 * 120.00438 * 179.97438 * 11 9 8 14 14 N 1.30674 * 119.99799 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00532 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47326 * 270.00729 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00479 * 15 13 11 18 18 H 1.48498 * 109.47210 * 150.00190 * 15 13 11 19 19 H 1.09006 * 109.47187 * 300.00132 * 1 2 3 20 20 H 1.08994 * 109.47211 * 59.99687 * 1 2 3 21 21 H 1.08996 * 109.47355 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47029 * 240.00144 * 2 1 3 23 23 H 1.09003 * 109.47161 * 120.00167 * 2 1 3 24 24 H 1.09004 * 109.47319 * 60.00816 * 3 2 1 25 25 H 1.08994 * 109.47326 * 300.00243 * 3 2 1 26 26 H 1.09005 * 114.39521 * 27.43072 * 6 4 3 27 27 H 1.08993 * 114.27001 * 254.54098 * 6 4 3 28 28 H 1.08998 * 113.46921 * 218.98529 * 7 6 4 29 29 H 1.09005 * 113.46828 * 88.54250 * 7 6 4 30 30 H 0.96996 * 120.00331 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9917 0.7479 -0.7272 6 6 4.1844 2.8501 -0.0712 7 6 5.1986 2.2603 0.9186 8 7 4.1562 1.3131 1.3419 9 6 3.8684 0.6247 2.4643 10 8 2.8957 -0.1057 2.4975 11 6 4.7258 0.7556 3.6434 12 1 5.5888 1.4042 3.6141 13 6 4.4264 0.0407 4.8099 14 7 3.3819 -0.7436 4.8455 15 14 5.5210 0.2073 6.3144 16 1 6.5959 -0.8158 6.2602 17 1 6.1281 1.5624 6.3371 18 1 4.7091 0.0079 7.5417 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 0.8901 25 1 1.6766 1.9563 -0.8899 26 1 3.5568 3.6368 0.3477 27 1 4.6058 3.1069 -1.0430 28 1 5.4960 2.9571 1.7023 29 1 6.0496 1.7814 0.4344 30 1 3.1747 -1.2391 5.6532 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282802.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -15.833246 kcal Electronic energy + Delta-G solvation = -12834.082845 eV Core-core repulsion = 10630.213774 eV Total energy + Delta-G solvation = -2203.869071 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.14851 -35.68651 -33.78034 -32.43829 -28.79368 -27.57711 -25.88509 -22.96541 -21.36463 -20.41699 -18.50863 -16.66175 -15.49487 -14.92361 -14.49940 -14.27441 -13.56673 -12.90704 -12.54168 -12.21735 -11.77474 -11.54940 -11.48744 -11.28737 -11.08458 -10.92139 -10.64775 -10.42345 -10.37025 -10.19175 -9.70413 -9.39087 -8.84896 -7.47586 -7.19127 -6.17849 -4.62817 3.13813 3.20558 3.24069 4.06250 4.44295 4.57392 5.03405 5.39669 5.66219 5.73030 5.80218 5.88479 6.02440 6.06099 6.09450 6.15990 6.27322 6.36033 6.48611 6.53734 6.67846 6.84365 6.89645 7.11165 7.39746 7.47745 8.16193 8.52027 9.03229 9.67213 10.59678 10.80667 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038659 B = 0.011726 C = 0.009271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.101432 B = 2387.375509 C = 3019.384592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C -0.107 4.107 4 C 0.130 3.870 5 H 0.066 0.934 6 C -0.158 4.158 7 C 0.108 3.892 8 N -0.659 5.659 9 C 0.584 3.416 10 O -0.563 6.563 11 C -0.537 4.537 12 H 0.066 0.934 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.265 1.265 18 H -0.279 1.279 19 H 0.050 0.950 20 H 0.038 0.962 21 H 0.045 0.955 22 H 0.040 0.960 23 H 0.114 0.886 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 4.975 -7.030 8.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C -0.145 4.145 4 C 0.025 3.975 5 H 0.084 0.916 6 C -0.196 4.196 7 C -0.017 4.017 8 N -0.400 5.400 9 C 0.392 3.608 10 O -0.446 6.446 11 C -0.574 4.574 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.732 3.268 16 H -0.198 1.198 17 H -0.189 1.189 18 H -0.204 1.204 19 H 0.069 0.931 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.132 0.868 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.362 4.294 -6.666 7.937 hybrid contribution 0.686 0.102 0.654 0.953 sum 1.048 4.397 -6.011 7.521 Atomic orbital electron populations 1.21670 0.97188 1.00564 1.00409 1.21910 0.94818 0.97287 1.04236 1.21600 0.94611 0.97630 1.00681 1.22394 0.94053 0.93839 0.87227 0.91590 1.23563 0.99466 0.97292 0.99255 1.22448 0.92305 0.91356 0.95559 1.50106 1.29229 1.49836 1.10864 1.17926 0.85187 0.77741 0.79982 1.90463 1.31033 1.41172 1.81921 1.20810 1.11947 1.28710 0.95926 0.91586 1.25699 0.94669 0.93510 0.99319 1.70009 1.22494 1.19915 1.27322 0.86369 0.80295 0.79366 0.80724 1.19752 1.18940 1.20425 0.93068 0.94302 0.93597 0.94086 0.86842 0.91781 0.92995 0.89693 0.91275 0.91770 0.92287 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.15 0.37 -2.08 16 2 C -0.15 -2.91 5.82 -26.73 -0.16 -3.06 16 3 C -0.11 -2.02 4.82 -26.73 -0.13 -2.15 16 4 C 0.13 2.47 3.96 -72.26 -0.29 2.18 16 5 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 6 C -0.16 -2.44 8.04 -26.08 -0.21 -2.65 16 7 C 0.11 1.98 8.30 -8.51 -0.07 1.91 16 8 N -0.66 -15.46 3.56 -178.96 -0.64 -16.10 16 9 C 0.58 16.89 7.90 -12.99 -0.10 16.78 16 10 O -0.56 -17.81 12.29 5.20 0.06 -17.74 16 11 C -0.54 -15.47 9.38 -35.63 -0.33 -15.80 16 12 H 0.07 1.78 7.76 -52.49 -0.41 1.37 16 13 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 14 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 15 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.11 2.85 4.88 -51.93 -0.25 2.60 16 24 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 252.68 15.07 3.81 3.81 Total: -1.00 -32.67 252.68 -6.59 -39.26 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.44 Total: 0.31 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.02 Total: -2.51 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.02 Total: -38.49 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.06 Total: -17.74 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.67 -6.59 -39.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282802.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.428 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds