Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47136 * 2 1 4 4 C 1.53008 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.77850 * 46.27514 * 4 3 2 6 6 C 1.53751 * 113.55335 * 177.13373 * 4 3 2 7 7 C 1.53496 * 83.25931 * 140.98619 * 6 4 3 8 8 N 1.47069 * 113.46555 * 275.49643 * 4 3 2 9 9 C 1.34777 * 136.05890 * 38.13845 * 8 4 3 10 10 O 1.21683 * 120.00011 * 359.62468 * 9 8 4 11 11 C 1.46373 * 120.00143 * 179.62524 * 9 8 4 12 12 H 1.08001 * 119.99611 * 0.02562 * 11 9 8 13 13 C 1.40045 * 120.00438 * 179.97438 * 11 9 8 14 14 N 1.30674 * 119.99799 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00532 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47326 * 270.00729 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00479 * 15 13 11 18 18 H 1.48498 * 109.47210 * 150.00190 * 15 13 11 19 19 H 1.09006 * 109.47187 * 300.00132 * 1 2 3 20 20 H 1.08994 * 109.47211 * 59.99687 * 1 2 3 21 21 H 1.08996 * 109.47355 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47029 * 240.00144 * 2 1 3 23 23 H 1.09003 * 109.47161 * 120.00167 * 2 1 3 24 24 H 1.09004 * 109.47319 * 60.00816 * 3 2 1 25 25 H 1.08994 * 109.47326 * 300.00243 * 3 2 1 26 26 H 1.09005 * 114.39521 * 27.43072 * 6 4 3 27 27 H 1.08993 * 114.27001 * 254.54098 * 6 4 3 28 28 H 1.08998 * 113.46921 * 218.98529 * 7 6 4 29 29 H 1.09005 * 113.46828 * 88.54250 * 7 6 4 30 30 H 0.96996 * 120.00331 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9917 0.7479 -0.7272 6 6 4.1844 2.8501 -0.0712 7 6 5.1986 2.2603 0.9186 8 7 4.1562 1.3131 1.3419 9 6 3.8684 0.6247 2.4643 10 8 2.8957 -0.1057 2.4975 11 6 4.7258 0.7556 3.6434 12 1 5.5888 1.4042 3.6141 13 6 4.4264 0.0407 4.8099 14 7 3.3819 -0.7436 4.8455 15 14 5.5210 0.2073 6.3144 16 1 6.5959 -0.8158 6.2602 17 1 6.1281 1.5624 6.3371 18 1 4.7091 0.0079 7.5417 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 0.8901 25 1 1.6766 1.9563 -0.8899 26 1 3.5568 3.6368 0.3477 27 1 4.6058 3.1069 -1.0430 28 1 5.4960 2.9571 1.7023 29 1 6.0496 1.7814 0.4344 30 1 3.1747 -1.2391 5.6532 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282802.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -38.105240 kcal Electronic energy + Delta-G solvation = -12835.048632 eV Core-core repulsion = 10630.213774 eV Total energy + Delta-G solvation = -2204.834857 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.78063 -37.74945 -35.32151 -34.58335 -30.59790 -29.07933 -27.92925 -24.44778 -23.11107 -21.93821 -20.30014 -18.53878 -17.55909 -16.49126 -16.17557 -16.03906 -15.31960 -14.40017 -14.30117 -14.02378 -13.44659 -13.22855 -13.01485 -12.87387 -12.78568 -12.58418 -12.47779 -12.07612 -12.06563 -11.82071 -11.31517 -10.93639 -10.88327 -9.60014 -9.03729 -8.27143 -6.83550 1.36415 1.38379 1.53081 2.21199 2.47206 2.77095 3.59783 3.63709 4.07254 4.23603 4.28135 4.36633 4.59171 4.62446 4.71197 4.80171 4.85458 4.96475 5.02018 5.10534 5.17117 5.30171 5.35257 5.45229 5.57979 5.75663 6.04695 6.53092 6.87660 7.71988 8.51394 8.71746 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038659 B = 0.011726 C = 0.009271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.101432 B = 2387.375509 C = 3019.384592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C -0.101 4.101 4 C 0.116 3.884 5 H 0.078 0.922 6 C -0.124 4.124 7 C 0.100 3.900 8 N -0.681 5.681 9 C 0.563 3.437 10 O -0.607 6.607 11 C -0.569 4.569 12 H 0.076 0.924 13 C 0.030 3.970 14 N -0.821 5.821 15 Si 0.995 3.005 16 H -0.261 1.261 17 H -0.252 1.252 18 H -0.271 1.271 19 H 0.031 0.969 20 H 0.073 0.927 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 6.508 -8.234 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C -0.139 4.139 4 C 0.013 3.987 5 H 0.096 0.904 6 C -0.162 4.162 7 C -0.023 4.023 8 N -0.421 5.421 9 C 0.370 3.630 10 O -0.493 6.493 11 C -0.606 4.606 12 H 0.094 0.906 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.814 3.186 16 H -0.186 1.186 17 H -0.175 1.175 18 H -0.196 1.196 19 H 0.051 0.949 20 H 0.092 0.908 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.136 0.864 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.605 5.871 -7.924 9.992 hybrid contribution 0.301 -0.364 0.902 1.019 sum 1.907 5.506 -7.022 9.125 Atomic orbital electron populations 1.21618 0.95331 1.01171 1.01126 1.21812 0.96623 0.97805 1.02208 1.21564 0.94758 0.96737 1.00871 1.22790 0.94276 0.96641 0.85031 0.90400 1.23424 0.97356 0.94775 1.00639 1.22798 0.92715 0.90475 0.96310 1.50033 1.31385 1.49319 1.11360 1.18201 0.84946 0.77962 0.81872 1.90447 1.32472 1.42970 1.83441 1.21305 1.12632 1.29564 0.97073 0.90561 1.26916 0.96116 0.92409 1.03015 1.70176 1.24935 1.21250 1.28752 0.85064 0.77914 0.80060 0.75533 1.18601 1.17490 1.19575 0.94939 0.90822 0.93163 0.92336 0.92434 0.95203 0.88780 0.89491 0.86425 0.91940 0.90218 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.91 71.98 0.71 -3.92 16 2 C -0.15 -5.92 5.82 30.59 0.18 -5.74 16 3 C -0.10 -3.73 4.82 30.60 0.15 -3.58 16 4 C 0.12 4.23 3.96 41.88 0.17 4.40 16 5 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 6 C -0.12 -3.39 8.04 31.01 0.25 -3.14 16 7 C 0.10 3.46 8.30 83.18 0.69 4.15 16 8 N -0.68 -32.11 3.56 -838.31 -2.99 -35.10 16 9 C 0.56 33.86 7.90 86.36 0.68 34.54 16 10 O -0.61 -40.65 12.29 -4.29 -0.05 -40.70 16 11 C -0.57 -33.62 9.38 24.83 0.23 -33.39 16 12 H 0.08 4.15 7.76 -2.91 -0.02 4.13 16 13 C 0.03 1.73 5.50 85.30 0.47 2.20 16 14 N -0.82 -51.28 11.83 21.83 0.26 -51.02 16 15 Si 0.99 42.24 29.56 68.60 2.03 44.27 16 16 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 17 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 19 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 20 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.06 3.05 4.88 -2.39 -0.01 3.04 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.09 2.37 8.13 -2.38 -0.02 2.35 16 27 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 Total: -1.00 -76.08 252.68 3.88 -72.20 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.10 Total: 14.82 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 3.53 Total: -4.47 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.73 Total: -86.12 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.05 Total: -40.70 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -76.08 3.88 -72.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282802.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.092 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds