Wall clock time and date at job start Mon Mar 30 2020 01:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47022 * 299.99935 * 3 2 1 6 6 H 1.48496 * 109.47179 * 60.00142 * 3 2 1 7 7 C 1.37880 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46668 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46622 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.54260 * 110.03281 * 292.91174 * 13 12 11 15 15 C 1.54969 * 104.16095 * 217.13684 * 14 13 12 16 16 C 1.54895 * 102.77590 * 37.88152 * 15 14 13 17 17 C 1.53869 * 110.03465 * 175.68880 * 13 12 11 18 18 H 0.97002 * 120.00167 * 359.97438 * 1 2 3 19 19 H 1.09006 * 109.46796 * 60.00646 * 9 7 2 20 20 H 1.08995 * 109.47490 * 300.00251 * 9 7 2 21 21 H 1.08990 * 109.46924 * 60.00357 * 10 9 7 22 22 H 1.09004 * 109.46978 * 300.00234 * 10 9 7 23 23 H 1.00896 * 111.00219 * 303.95583 * 11 10 9 24 24 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 25 25 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 26 26 H 1.09008 * 110.01621 * 54.30216 * 13 12 11 27 27 H 1.09002 * 110.48579 * 335.77915 * 14 13 12 28 28 H 1.09002 * 110.49291 * 98.42746 * 14 13 12 29 29 H 1.09007 * 110.71801 * 279.57243 * 15 14 13 30 30 H 1.08998 * 110.92780 * 156.29400 * 15 14 13 31 31 H 1.09000 * 110.48759 * 203.40245 * 16 15 14 32 32 H 1.09000 * 110.59322 * 80.82239 * 16 15 14 33 33 H 1.09001 * 110.03406 * 238.57258 * 17 13 12 34 34 H 1.09000 * 110.03035 * 359.95273 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 1.6353 -7.3800 -0.0018 14 6 0.8786 -7.5357 1.3334 15 6 0.9525 -9.0537 1.6363 16 6 2.3786 -9.4286 1.1620 17 6 2.5884 -8.5831 -0.1111 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5566 -0.8904 20 1 0.6247 -2.5571 0.8896 21 1 2.8719 -3.6043 0.8894 22 1 2.8721 -3.6042 -0.8905 23 1 0.8741 -4.9846 0.7799 24 1 3.0633 -6.0344 -0.8918 25 1 3.0634 -6.0353 0.8882 26 1 0.9305 -7.3853 -0.8333 27 1 1.3722 -6.9654 2.1204 28 1 -0.1583 -7.2179 1.2237 29 1 0.2001 -9.5980 1.0655 30 1 0.8379 -9.2438 2.7035 31 1 2.4357 -10.4916 0.9279 32 1 3.1163 -9.1659 1.9203 33 1 2.3455 -9.1727 -0.9951 34 1 3.6208 -8.2378 -0.1650 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037258581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:40 Heat of formation + Delta-G solvation = -36.246110 kcal Electronic energy + Delta-G solvation = -12293.473202 eV Core-core repulsion = 10224.552057 eV Total energy + Delta-G solvation = -2068.921145 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.51093 -35.41911 -32.91050 -30.50637 -28.74798 -27.95576 -24.49955 -22.70147 -20.81615 -20.38570 -19.33921 -16.35580 -15.97342 -15.21085 -14.94348 -14.40220 -13.68039 -13.34403 -13.24917 -12.66021 -12.17397 -12.10402 -11.17345 -11.11213 -11.03028 -11.00415 -10.91953 -10.67592 -10.52149 -10.41374 -10.34605 -9.92758 -9.31482 -9.09709 -8.33274 -7.74832 -5.97617 -4.00033 3.32646 3.39805 3.44106 4.44473 4.56366 4.64177 4.73229 5.00995 5.38306 5.41146 5.43123 5.47398 5.63701 5.66891 5.73074 5.81970 5.89408 6.00034 6.08022 6.13199 6.27940 6.33703 6.39466 6.45826 6.56847 7.02168 7.54419 7.77075 7.87164 8.02137 8.12444 8.46790 9.07571 9.63673 11.13938 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.089909 B = 0.005404 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.351048 B = 5179.881696 C = 5328.198440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.065 3.935 11 N -0.693 5.693 12 C 0.065 3.935 13 C -0.091 4.091 14 C -0.122 4.122 15 C -0.125 4.125 16 C -0.125 4.125 17 C -0.120 4.120 18 H 0.260 0.740 19 H 0.025 0.975 20 H 0.013 0.987 21 H 0.014 0.986 22 H 0.057 0.943 23 H 0.335 0.665 24 H 0.065 0.935 25 H 0.021 0.979 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -16.292 2.177 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.324 5.324 12 C -0.064 4.064 13 C -0.110 4.110 14 C -0.160 4.160 15 C -0.162 4.162 16 C -0.162 4.162 17 C -0.158 4.158 18 H 0.069 0.931 19 H 0.044 0.956 20 H 0.031 0.969 21 H 0.032 0.968 22 H 0.075 0.925 23 H 0.152 0.848 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.194 -16.169 1.483 16.548 hybrid contribution 0.793 1.028 0.912 1.587 sum 3.987 -15.141 2.395 15.839 Atomic orbital electron populations 1.69987 1.06039 1.26448 1.50832 1.25008 0.94837 0.99217 0.95328 0.86532 0.80078 0.83787 0.77573 1.19775 1.20967 1.21033 1.21230 0.93025 0.91049 1.50647 0.92725 1.19079 0.94053 0.90493 0.97685 1.22152 0.96962 0.88674 0.98514 1.60597 1.19897 1.02148 1.49715 1.22053 0.94358 0.90281 0.99733 1.21810 0.97167 0.93765 0.98263 1.22463 1.00696 0.95760 0.97054 1.22504 0.96815 0.96431 1.00485 1.22352 0.97147 0.99162 0.97553 1.22180 0.99675 0.96230 0.97736 0.93063 0.95643 0.96858 0.96823 0.92455 0.84758 0.91670 0.96054 0.90252 0.91854 0.91330 0.91690 0.91953 0.92110 0.91903 0.91970 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 11 N -0.69 -12.95 6.50 -113.77 -0.74 -13.69 16 12 C 0.07 1.00 4.80 -3.82 -0.02 0.98 16 13 C -0.09 -1.16 3.15 -89.51 -0.28 -1.44 16 14 C -0.12 -1.45 5.54 -25.03 -0.14 -1.59 16 15 C -0.12 -1.24 6.91 -24.69 -0.17 -1.41 16 16 C -0.12 -1.20 6.83 -25.07 -0.17 -1.37 16 17 C -0.12 -1.28 6.46 -25.62 -0.17 -1.45 16 18 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 19 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 20 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 22 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.33 6.06 7.93 -39.29 -0.31 5.75 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.02 0.32 8.02 -51.93 -0.42 -0.09 16 26 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.06 0.79 7.77 -51.93 -0.40 0.38 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 LS Contribution 274.91 15.07 4.14 4.14 Total: -1.00 -30.09 274.91 -8.55 -38.64 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.14 Total: -1.19 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.52 Total: -18.21 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.00 Total: -40.31 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.09 -8.55 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037258581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.394 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds