Wall clock time and date at job start Mon Mar 30 2020 01:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47022 * 299.99935 * 3 2 1 6 6 H 1.48496 * 109.47179 * 60.00142 * 3 2 1 7 7 C 1.37880 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46668 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46622 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.54260 * 110.03281 * 292.91174 * 13 12 11 15 15 C 1.54969 * 104.16095 * 217.13684 * 14 13 12 16 16 C 1.54895 * 102.77590 * 37.88152 * 15 14 13 17 17 C 1.53869 * 110.03465 * 175.68880 * 13 12 11 18 18 H 0.97002 * 120.00167 * 359.97438 * 1 2 3 19 19 H 1.09006 * 109.46796 * 60.00646 * 9 7 2 20 20 H 1.08995 * 109.47490 * 300.00251 * 9 7 2 21 21 H 1.08990 * 109.46924 * 60.00357 * 10 9 7 22 22 H 1.09004 * 109.46978 * 300.00234 * 10 9 7 23 23 H 1.00896 * 111.00219 * 303.95583 * 11 10 9 24 24 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 25 25 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 26 26 H 1.09008 * 110.01621 * 54.30216 * 13 12 11 27 27 H 1.09002 * 110.48579 * 335.77915 * 14 13 12 28 28 H 1.09002 * 110.49291 * 98.42746 * 14 13 12 29 29 H 1.09007 * 110.71801 * 279.57243 * 15 14 13 30 30 H 1.08998 * 110.92780 * 156.29400 * 15 14 13 31 31 H 1.09000 * 110.48759 * 203.40245 * 16 15 14 32 32 H 1.09000 * 110.59322 * 80.82239 * 16 15 14 33 33 H 1.09001 * 110.03406 * 238.57258 * 17 13 12 34 34 H 1.09000 * 110.03035 * 359.95273 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 1.6353 -7.3800 -0.0018 14 6 0.8786 -7.5357 1.3334 15 6 0.9525 -9.0537 1.6363 16 6 2.3786 -9.4286 1.1620 17 6 2.5884 -8.5831 -0.1111 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5566 -0.8904 20 1 0.6247 -2.5571 0.8896 21 1 2.8719 -3.6043 0.8894 22 1 2.8721 -3.6042 -0.8905 23 1 0.8741 -4.9846 0.7799 24 1 3.0633 -6.0344 -0.8918 25 1 3.0634 -6.0353 0.8882 26 1 0.9305 -7.3853 -0.8333 27 1 1.3722 -6.9654 2.1204 28 1 -0.1583 -7.2179 1.2237 29 1 0.2001 -9.5980 1.0655 30 1 0.8379 -9.2438 2.7035 31 1 2.4357 -10.4916 0.9279 32 1 3.1163 -9.1659 1.9203 33 1 2.3455 -9.1727 -0.9951 34 1 3.6208 -8.2378 -0.1650 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037258581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:40 Heat of formation + Delta-G solvation = -54.824202 kcal Electronic energy + Delta-G solvation = -12294.278809 eV Core-core repulsion = 10224.552057 eV Total energy + Delta-G solvation = -2069.726751 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.52890 -36.99339 -34.95854 -32.13438 -29.77025 -29.34771 -26.31185 -24.14207 -22.52564 -21.42232 -20.37264 -18.52930 -17.24217 -16.54595 -16.30550 -15.97870 -15.22954 -14.82446 -14.22584 -14.16157 -13.98070 -13.48217 -13.06421 -12.84923 -12.50254 -12.03888 -12.00295 -11.92785 -11.87769 -11.58820 -11.49029 -11.39045 -11.27055 -11.08440 -10.58213 -9.29688 -8.21496 -6.33456 1.40015 1.40789 1.54228 2.40044 3.11863 3.33478 3.73077 3.79868 3.94050 4.36730 4.40161 4.56663 4.58230 4.60882 4.63827 4.75042 4.87362 4.91070 4.96528 5.04053 5.11425 5.13321 5.26987 5.38827 5.42806 5.50226 5.54751 5.65113 5.77513 6.13230 6.27743 6.53922 6.83786 7.36088 8.91068 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.089909 B = 0.005404 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.351048 B = 5179.881696 C = 5328.198440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.082 3.918 11 N -0.699 5.699 12 C 0.067 3.933 13 C -0.088 4.088 14 C -0.125 4.125 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.118 4.118 18 H 0.264 0.736 19 H -0.006 1.006 20 H -0.009 1.009 21 H 0.017 0.983 22 H 0.057 0.943 23 H 0.337 0.663 24 H 0.065 0.935 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -16.913 2.410 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.330 5.330 12 C -0.062 4.062 13 C -0.107 4.107 14 C -0.163 4.163 15 C -0.158 4.158 16 C -0.159 4.159 17 C -0.156 4.156 18 H 0.073 0.927 19 H 0.013 0.987 20 H 0.009 0.991 21 H 0.035 0.965 22 H 0.075 0.925 23 H 0.155 0.845 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.404 -16.816 1.717 17.468 hybrid contribution 0.375 1.188 0.832 1.498 sum 4.779 -15.628 2.549 16.540 Atomic orbital electron populations 1.70119 1.07880 1.27812 1.51418 1.26000 0.95784 1.03453 0.94506 0.85337 0.78984 0.78451 0.77878 1.18573 1.20251 1.20197 1.21645 0.93541 0.92254 1.50996 0.92164 1.18935 0.94318 0.92382 0.95028 1.21788 0.95627 0.88633 0.98597 1.60527 1.20498 1.01917 1.50055 1.22139 0.94159 0.90033 0.99870 1.21776 0.97255 0.93272 0.98397 1.22467 1.00028 0.97441 0.96342 1.22498 0.97383 0.94659 1.01290 1.22356 0.96756 0.99940 0.96869 1.22170 0.99058 0.95443 0.98905 0.92679 0.98741 0.99081 0.96489 0.92475 0.84488 0.91668 0.95597 0.91225 0.92603 0.92015 0.91023 0.91003 0.90416 0.91782 0.90962 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.71 5.23 29.85 0.16 1.86 16 10 C 0.08 3.65 5.62 86.31 0.49 4.14 16 11 N -0.70 -26.21 6.50 -513.86 -3.34 -29.55 16 12 C 0.07 1.99 4.80 86.30 0.41 2.40 16 13 C -0.09 -2.14 3.15 -10.07 -0.03 -2.17 16 14 C -0.13 -2.85 5.54 31.69 0.18 -2.67 16 15 C -0.12 -2.15 6.91 31.91 0.22 -1.93 16 16 C -0.12 -2.02 6.83 31.67 0.22 -1.80 16 17 C -0.12 -2.26 6.46 31.32 0.20 -2.06 16 18 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 19 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 20 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 21 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 23 H 0.34 12.36 7.93 -89.70 -0.71 11.65 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.03 0.76 8.02 -2.39 -0.02 0.74 16 26 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.06 1.35 7.77 -2.39 -0.02 1.33 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.23 7.67 -2.39 -0.02 1.22 16 Total: -1.00 -63.98 274.91 1.83 -62.15 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.33 Total: 11.61 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 2.53 Total: -33.51 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -3.06 Total: -87.13 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.98 1.83 -62.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037258581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.322 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds