Wall clock time and date at job start Mon Mar 30 2020 01:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48503 * 109.47390 * 240.00517 * 3 2 1 5 5 H 1.48498 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46922 * 120.00602 * 3 2 1 7 7 C 1.37875 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99966 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47518 * 180.02562 * 9 7 2 11 11 C 1.46892 * 111.00234 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47235 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47126 * 180.02562 * 12 11 10 14 14 C 1.54961 * 110.92578 * 71.54077 * 13 12 11 15 15 C 1.54270 * 104.16191 * 156.29427 * 14 13 12 16 16 C 1.53869 * 106.63967 * 336.44607 * 15 14 13 17 17 C 1.54268 * 106.60115 * 359.97438 * 16 15 14 18 18 H 0.96996 * 119.99991 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47347 * 60.00223 * 9 7 2 20 20 H 1.09003 * 109.47261 * 300.00770 * 9 7 2 21 21 H 1.00903 * 110.99259 * 303.96078 * 10 9 7 22 22 H 1.09001 * 109.47256 * 60.00366 * 11 10 9 23 23 H 1.09000 * 109.46942 * 299.99860 * 11 10 9 24 24 H 1.08995 * 109.46922 * 59.99863 * 12 11 10 25 25 H 1.09000 * 109.47141 * 299.99860 * 12 11 10 26 26 H 1.09001 * 110.67554 * 308.23161 * 13 12 11 27 27 H 1.08997 * 110.47708 * 37.64024 * 14 13 12 28 28 H 1.09002 * 110.53308 * 274.97416 * 14 13 12 29 29 H 1.09002 * 110.03399 * 217.13605 * 15 14 13 30 30 H 1.08995 * 110.02943 * 95.75505 * 15 14 13 31 31 H 1.08999 * 110.03405 * 119.26051 * 16 15 14 32 32 H 1.09001 * 110.03705 * 240.64196 * 16 15 14 33 33 H 1.08997 * 110.48788 * 142.28685 * 17 16 15 34 34 H 1.09000 * 110.48806 * 264.79985 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5304 -6.0430 -0.0018 13 6 1.8010 -7.3879 -0.0031 14 6 1.1347 -7.6548 -1.3764 15 6 1.0000 -9.1904 -1.4385 16 6 2.0629 -9.7648 -0.4856 17 6 2.8077 -8.5584 0.1225 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5568 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 2.8406 -3.5485 -0.7819 22 1 0.8809 -4.9812 -0.8914 23 1 0.8803 -4.9817 0.8886 24 1 3.1553 -5.9690 0.8882 25 1 3.1552 -5.9682 -0.8918 26 1 1.0625 -7.4260 0.7978 27 1 1.7705 -7.2946 -2.1851 28 1 0.1529 -7.1836 -1.4230 29 1 1.1814 -9.5404 -2.4547 30 1 0.0045 -9.4913 -1.1124 31 1 1.5832 -10.3439 0.3034 32 1 2.7597 -10.3942 -1.0392 33 1 3.0463 -8.7457 1.1695 34 1 3.7152 -8.3460 -0.4425 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037492888.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:37 Heat of formation + Delta-G solvation = -55.276645 kcal Electronic energy + Delta-G solvation = -12251.141861 eV Core-core repulsion = 10181.395490 eV Total energy + Delta-G solvation = -2069.746371 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.40379 -37.13347 -34.77510 -32.52928 -29.57051 -29.04574 -26.65321 -23.75692 -22.85235 -20.99195 -20.77526 -18.55384 -16.80588 -16.75908 -16.40934 -15.92287 -15.14214 -14.80274 -14.37050 -14.17875 -13.78173 -13.51934 -13.00479 -12.74801 -12.58454 -12.21250 -12.12891 -12.04388 -11.90527 -11.58401 -11.47021 -11.30270 -11.21801 -11.12325 -10.66559 -9.14137 -8.23674 -6.35924 1.41034 1.45317 1.53417 2.39857 3.09285 3.48534 3.73751 3.81760 3.94281 4.19015 4.41896 4.57270 4.62989 4.69097 4.71913 4.76550 4.81740 4.93637 5.00777 5.05210 5.14549 5.18786 5.23259 5.29539 5.32709 5.40218 5.55094 5.57998 5.60549 6.00298 6.43339 6.71111 6.87618 7.35413 8.88056 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.095352 B = 0.005296 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.579777 B = 5285.637752 C = 5440.825222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.692 5.692 11 C 0.060 3.940 12 C -0.094 4.094 13 C -0.091 4.091 14 C -0.124 4.124 15 C -0.123 4.123 16 C -0.122 4.122 17 C -0.117 4.117 18 H 0.266 0.734 19 H -0.041 1.041 20 H -0.003 1.003 21 H 0.335 0.665 22 H 0.015 0.985 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -16.875 -2.065 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.322 5.322 11 C -0.069 4.069 12 C -0.132 4.132 13 C -0.110 4.110 14 C -0.162 4.162 15 C -0.161 4.161 16 C -0.160 4.160 17 C -0.155 4.155 18 H 0.075 0.925 19 H -0.023 1.023 20 H 0.015 0.985 21 H 0.152 0.848 22 H 0.033 0.967 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.273 -16.767 -1.378 17.358 hybrid contribution -0.481 1.019 -0.853 1.413 sum 3.792 -15.749 -2.232 16.352 Atomic orbital electron populations 1.70093 1.07933 1.28178 1.51363 1.26012 0.95824 1.03577 0.94386 0.85325 0.78066 0.77284 0.79248 1.18942 1.20663 1.19234 1.21539 0.93878 0.91414 1.50960 0.91608 1.19214 0.90720 0.89186 0.93011 1.60567 1.20599 1.01849 1.49214 1.21978 0.96364 0.89649 0.98927 1.21460 0.97123 0.92341 1.02297 1.22112 0.97548 0.93666 0.97650 1.22471 1.00126 0.96580 0.97011 1.22134 0.99427 0.94446 1.00093 1.22125 0.97681 0.97420 0.98736 1.22394 0.97884 0.93988 1.01198 0.92534 1.02327 0.98469 0.84832 0.96713 0.93081 0.91561 0.91770 0.91166 0.91937 0.92820 0.91303 0.91758 0.91397 0.90990 0.91242 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.98 44.89 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.54 -31.81 9.32 25.60 0.24 -31.57 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.63 5.44 85.56 0.47 12.10 16 10 N -0.69 -31.45 6.49 -517.94 -3.36 -34.82 16 11 C 0.06 2.25 5.58 86.31 0.48 2.73 16 12 C -0.09 -2.69 4.98 30.59 0.15 -2.54 16 13 C -0.09 -2.14 2.86 -9.48 -0.03 -2.17 16 14 C -0.12 -2.81 5.71 31.70 0.18 -2.63 16 15 C -0.12 -2.23 6.80 31.32 0.21 -2.02 16 16 C -0.12 -2.01 6.80 31.32 0.21 -1.80 16 17 C -0.12 -2.23 6.27 31.67 0.20 -2.03 16 18 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 19 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 20 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 21 H 0.33 14.29 8.72 -89.69 -0.78 13.50 16 22 H 0.01 0.56 7.66 -2.39 -0.02 0.54 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.06 1.74 8.00 -2.39 -0.02 1.73 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.44 7.95 -2.39 -0.02 1.42 16 28 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 Total: -1.00 -64.20 275.88 1.78 -62.41 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.26 Total: 12.48 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 2.58 Total: -29.45 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -3.08 Total: -92.37 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.20 1.78 -62.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037492888.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.137 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds