Wall clock time and date at job start Mon Mar 30 2020 01:53:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46904 * 110.01265 * 2 1
4 4 C 1.46899 * 111.00029 * 59.30312 * 3 2 1
5 5 C 1.52997 * 109.47254 * 179.97438 * 4 3 2
6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 3
7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4
8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4
9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5
10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5
11 11 H 1.48499 * 109.46616 * 0.02562 * 10 8 6
12 12 H 1.48501 * 109.47104 * 119.99966 * 10 8 6
13 13 H 1.48489 * 109.47200 * 240.00246 * 10 8 6
14 14 C 1.54264 * 110.03552 * 121.39145 * 2 1 3
15 15 C 1.54964 * 104.16034 * 95.75649 * 14 2 1
16 16 C 1.54898 * 102.77698 * 37.88651 * 15 14 2
17 17 C 1.53873 * 110.03249 * 238.61496 * 2 1 3
18 18 H 1.08995 * 109.47427 * 60.69877 * 1 2 3
19 19 H 1.08999 * 109.46857 * 180.69919 * 1 2 3
20 20 H 1.08998 * 109.46862 * 300.69984 * 1 2 3
21 21 H 1.00908 * 110.99583 * 183.25225 * 3 2 1
22 22 H 1.09002 * 109.47043 * 299.99792 * 4 3 2
23 23 H 1.09001 * 109.47354 * 59.99854 * 4 3 2
24 24 H 1.09002 * 109.47153 * 300.00004 * 5 4 3
25 25 H 1.08998 * 109.47533 * 59.99633 * 5 4 3
26 26 H 0.97002 * 119.99731 * 180.02562 * 9 8 6
27 27 H 1.08999 * 110.48556 * 214.40335 * 14 2 1
28 28 H 1.09000 * 110.48274 * 337.04674 * 14 2 1
29 29 H 1.09001 * 110.71857 * 279.57580 * 15 14 2
30 30 H 1.08993 * 110.92458 * 156.29601 * 15 14 2
31 31 H 1.08997 * 110.48664 * 203.40739 * 16 15 14
32 32 H 1.08997 * 110.48119 * 80.76429 * 16 15 14
33 33 H 1.09006 * 110.03258 * 359.94587 * 17 2 1
34 34 H 1.08998 * 110.03586 * 121.32871 * 17 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0328 1.3803 0.0000
4 6 1.5551 2.1146 1.1793
5 6 2.0986 3.5444 1.1445
6 6 1.6081 4.2978 2.3539
7 1 0.9726 3.8060 3.0754
8 6 1.9714 5.6148 2.5399
9 7 2.7457 6.2136 1.6615
10 14 1.3628 6.5490 4.0387
11 1 0.5127 5.6563 4.8666
12 1 2.5249 7.0089 4.8408
13 1 0.5677 7.7239 3.6004
14 6 2.0585 -0.7549 1.2371
15 6 2.3300 -2.1897 0.7184
16 6 2.8886 -1.9395 -0.7045
17 6 2.0571 -0.7529 -1.2341
18 1 -0.3634 0.5029 -0.8961
19 1 -0.3633 -1.0276 0.0125
20 1 -0.3633 0.5247 0.8836
21 1 3.0403 1.3982 -0.0534
22 1 0.4654 2.1396 1.1749
23 1 1.9035 1.6157 2.0836
24 1 3.1883 3.5190 1.1491
25 1 1.7507 4.0435 0.2402
26 1 3.0017 7.1400 1.7925
27 1 2.9807 -0.2988 1.5972
28 1 1.3059 -0.7694 2.0254
29 1 1.4054 -2.7653 0.6747
30 1 3.0689 -2.6951 1.3401
31 1 2.7416 -2.8185 -1.3321
32 1 3.9449 -1.6748 -0.6585
33 1 1.2229 -1.1191 -1.8326
34 1 2.6853 -0.0939 -1.8335
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042187309.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:53:03
Heat of formation + Delta-G solvation = -27.848662 kcal
Electronic energy + Delta-G solvation = -12765.106115 eV
Core-core repulsion = 10696.549111 eV
Total energy + Delta-G solvation = -2068.557004 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-39.02644 -34.58317 -32.67027 -30.20735 -28.62472 -28.01149 -25.10094 -23.48683
-20.97308 -20.01543 -18.63353 -16.35699 -15.62877 -15.41472 -14.41567 -14.13606
-13.67841 -13.32693 -12.95481 -12.40209 -12.21716 -11.89080 -11.32461 -11.10962
-11.01701 -10.96781 -10.90896 -10.72005 -10.47138 -10.43933 -10.29012 -9.81091
-9.29693 -9.07577 -8.32562 -7.67490 -5.97109 -3.99320 3.32659 3.39862
3.44052 4.45439 4.64304 4.73353 4.86410 5.14877 5.38846 5.47181
5.52849 5.59170 5.62069 5.73727 5.92317 5.97698 6.04456 6.10124
6.15089 6.31058 6.38937 6.40300 6.49519 6.52923 6.63280 7.07414
7.60473 7.79410 7.89726 8.05353 8.14632 8.48209 9.08500 9.64323
11.14447
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.066449 B = 0.006868 C = 0.006732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 421.271563 B = 4076.172647 C = 4158.170162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.108 3.892
3 N -0.681 5.681
4 C 0.063 3.937
5 C 0.024 3.976
6 C -0.519 4.519
7 H 0.054 0.946
8 C 0.057 3.943
9 N -0.894 5.894
10 Si 0.892 3.108
11 H -0.273 1.273
12 H -0.284 1.284
13 H -0.284 1.284
14 C -0.151 4.151
15 C -0.122 4.122
16 C -0.126 4.126
17 C -0.114 4.114
18 H 0.060 0.940
19 H 0.050 0.950
20 H 0.058 0.942
21 H 0.335 0.665
22 H 0.060 0.940
23 H 0.016 0.984
24 H 0.012 0.988
25 H 0.024 0.976
26 H 0.259 0.741
27 H 0.065 0.935
28 H 0.064 0.936
29 H 0.063 0.937
30 H 0.060 0.940
31 H 0.060 0.940
32 H 0.063 0.937
33 H 0.064 0.936
34 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.271 -14.697 -3.196 15.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.016 3.984
3 N -0.311 5.311
4 C -0.065 4.065
5 C -0.013 4.013
6 C -0.558 4.558
7 H 0.072 0.928
8 C -0.144 4.144
9 N -0.533 5.533
10 Si 0.720 3.280
11 H -0.198 1.198
12 H -0.211 1.211
13 H -0.210 1.210
14 C -0.190 4.190
15 C -0.160 4.160
16 C -0.163 4.163
17 C -0.152 4.152
18 H 0.079 0.921
19 H 0.069 0.931
20 H 0.077 0.923
21 H 0.153 0.847
22 H 0.078 0.922
23 H 0.034 0.966
24 H 0.030 0.970
25 H 0.042 0.958
26 H 0.069 0.931
27 H 0.084 0.916
28 H 0.082 0.918
29 H 0.082 0.918
30 H 0.079 0.921
31 H 0.079 0.921
32 H 0.081 0.919
33 H 0.083 0.917
34 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -1.704 -14.273 -3.652 14.831
hybrid contribution 0.294 0.255 1.579 1.627
sum -1.409 -14.018 -2.072 14.240
Atomic orbital electron populations
1.21880 0.94143 1.00558 1.02610 1.21569 0.95191 0.88640 0.92964
1.60788 1.14967 1.11481 1.43883 1.22178 0.99581 0.96318 0.88392
1.19076 0.95965 0.88970 0.97305 1.21227 1.30551 0.96437 1.07586
0.92778 1.25009 0.95220 0.97712 0.96490 1.69990 1.36010 1.12033
1.35301 0.86542 0.78589 0.79904 0.83003 1.19791 1.21053 1.20975
1.23165 1.01187 0.95786 0.98895 1.22450 1.00367 0.96919 0.96266
1.22375 0.99586 0.98056 0.96321 1.22241 0.99521 0.96256 0.97229
0.92110 0.93094 0.92307 0.84722 0.92163 0.96578 0.96959 0.95768
0.93090 0.91632 0.91771 0.91820 0.92140 0.92072 0.91856 0.91696
0.90943
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.94 7.90 37.16 0.29 -1.65 16
2 C 0.11 1.61 0.86 -130.48 -0.11 1.50 16
3 N -0.68 -12.49 5.96 -98.83 -0.59 -13.08 16
4 C 0.06 1.36 4.97 -3.83 -0.02 1.35 16
5 C 0.02 0.65 5.23 -27.89 -0.15 0.50 16
6 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16
7 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16
8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
9 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16
10 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16
11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
14 C -0.15 -2.11 4.80 -25.03 -0.12 -2.23 16
15 C -0.12 -1.39 6.91 -24.69 -0.17 -1.56 16
16 C -0.13 -1.39 6.83 -25.07 -0.17 -1.56 16
17 C -0.11 -1.46 6.19 -25.61 -0.16 -1.62 16
18 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
20 H 0.06 0.92 6.41 -51.93 -0.33 0.58 16
21 H 0.33 6.02 8.67 -39.29 -0.34 5.68 16
22 H 0.06 1.31 6.32 -51.93 -0.33 0.98 16
23 H 0.02 0.34 7.04 -51.93 -0.37 -0.02 16
24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16
26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
27 H 0.06 0.99 7.82 -51.93 -0.41 0.59 16
28 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16
29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16
34 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16
LS Contribution 269.22 15.07 4.06 4.06
Total: -1.00 -29.97 269.22 -7.74 -37.71
By element:
Atomic # 1 Polarization: 5.97 SS G_CDS: -5.91 Total: 0.06 kcal
Atomic # 6 Polarization: -18.04 SS G_CDS: -1.01 Total: -19.05 kcal
Atomic # 7 Polarization: -39.87 SS G_CDS: 0.15 Total: -39.72 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 4.06 Total: 4.06 kcal
Total: -29.97 -7.74 -37.71 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042187309.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.862 kcal
(2) G-P(sol) polarization free energy of solvation -29.966 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.105 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds