Wall clock time and date at job start Mon Mar 30 2020 01:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 110.01265 * 2 1 4 4 C 1.46899 * 111.00029 * 59.30312 * 3 2 1 5 5 C 1.52997 * 109.47254 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46616 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47104 * 119.99966 * 10 8 6 13 13 H 1.48489 * 109.47200 * 240.00246 * 10 8 6 14 14 C 1.54264 * 110.03552 * 121.39145 * 2 1 3 15 15 C 1.54964 * 104.16034 * 95.75649 * 14 2 1 16 16 C 1.54898 * 102.77698 * 37.88651 * 15 14 2 17 17 C 1.53873 * 110.03249 * 238.61496 * 2 1 3 18 18 H 1.08995 * 109.47427 * 60.69877 * 1 2 3 19 19 H 1.08999 * 109.46857 * 180.69919 * 1 2 3 20 20 H 1.08998 * 109.46862 * 300.69984 * 1 2 3 21 21 H 1.00908 * 110.99583 * 183.25225 * 3 2 1 22 22 H 1.09002 * 109.47043 * 299.99792 * 4 3 2 23 23 H 1.09001 * 109.47354 * 59.99854 * 4 3 2 24 24 H 1.09002 * 109.47153 * 300.00004 * 5 4 3 25 25 H 1.08998 * 109.47533 * 59.99633 * 5 4 3 26 26 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 27 27 H 1.08999 * 110.48556 * 214.40335 * 14 2 1 28 28 H 1.09000 * 110.48274 * 337.04674 * 14 2 1 29 29 H 1.09001 * 110.71857 * 279.57580 * 15 14 2 30 30 H 1.08993 * 110.92458 * 156.29601 * 15 14 2 31 31 H 1.08997 * 110.48664 * 203.40739 * 16 15 14 32 32 H 1.08997 * 110.48119 * 80.76429 * 16 15 14 33 33 H 1.09006 * 110.03258 * 359.94587 * 17 2 1 34 34 H 1.08998 * 110.03586 * 121.32871 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0328 1.3803 0.0000 4 6 1.5551 2.1146 1.1793 5 6 2.0986 3.5444 1.1445 6 6 1.6081 4.2978 2.3539 7 1 0.9726 3.8060 3.0754 8 6 1.9714 5.6148 2.5399 9 7 2.7457 6.2136 1.6615 10 14 1.3628 6.5490 4.0387 11 1 0.5127 5.6563 4.8666 12 1 2.5249 7.0089 4.8408 13 1 0.5677 7.7239 3.6004 14 6 2.0585 -0.7549 1.2371 15 6 2.3300 -2.1897 0.7184 16 6 2.8886 -1.9395 -0.7045 17 6 2.0571 -0.7529 -1.2341 18 1 -0.3634 0.5029 -0.8961 19 1 -0.3633 -1.0276 0.0125 20 1 -0.3633 0.5247 0.8836 21 1 3.0403 1.3982 -0.0534 22 1 0.4654 2.1396 1.1749 23 1 1.9035 1.6157 2.0836 24 1 3.1883 3.5190 1.1491 25 1 1.7507 4.0435 0.2402 26 1 3.0017 7.1400 1.7925 27 1 2.9807 -0.2988 1.5972 28 1 1.3059 -0.7694 2.0254 29 1 1.4054 -2.7653 0.6747 30 1 3.0689 -2.6951 1.3401 31 1 2.7416 -2.8185 -1.3321 32 1 3.9449 -1.6748 -0.6585 33 1 1.2229 -1.1191 -1.8326 34 1 2.6853 -0.0939 -1.8335 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042187309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:03 Heat of formation + Delta-G solvation = -46.673827 kcal Electronic energy + Delta-G solvation = -12765.922435 eV Core-core repulsion = 10696.549111 eV Total energy + Delta-G solvation = -2069.373325 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21460 -36.26329 -34.59911 -31.79746 -29.66316 -29.64406 -26.66281 -25.12450 -22.57932 -21.26619 -19.89728 -18.48570 -17.00602 -16.62923 -16.36764 -15.64081 -14.93705 -14.58099 -14.47169 -14.14368 -13.67985 -13.20548 -13.01858 -12.86654 -12.62719 -12.39632 -12.10595 -11.97752 -11.93265 -11.61199 -11.47492 -11.40896 -11.25872 -11.11610 -10.57772 -9.17668 -8.21566 -6.33259 1.39088 1.39848 1.53247 2.39593 3.11663 3.34060 3.69321 3.80919 4.04740 4.39541 4.46325 4.52610 4.56046 4.57904 4.66031 4.80546 4.94900 4.96346 4.99186 5.07048 5.11672 5.19218 5.23934 5.34811 5.45066 5.46564 5.49642 5.68138 5.80739 6.17345 6.37579 6.60484 6.84504 7.36171 8.90981 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066449 B = 0.006868 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.271563 B = 4076.172647 C = 4158.170162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.100 3.900 3 N -0.688 5.688 4 C 0.086 3.914 5 C 0.031 3.969 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.933 5.933 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.277 1.277 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.112 4.112 18 H 0.054 0.946 19 H 0.078 0.922 20 H 0.042 0.958 21 H 0.335 0.665 22 H 0.058 0.942 23 H 0.016 0.984 24 H -0.012 1.012 25 H -0.008 1.008 26 H 0.264 0.736 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -16.131 -2.614 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 N -0.318 5.318 4 C -0.043 4.043 5 C -0.006 4.006 6 C -0.582 4.582 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.792 3.208 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.202 1.202 14 C -0.191 4.191 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.150 4.150 18 H 0.073 0.927 19 H 0.097 0.903 20 H 0.061 0.939 21 H 0.153 0.847 22 H 0.076 0.924 23 H 0.034 0.966 24 H 0.007 0.993 25 H 0.011 0.989 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.347 -15.732 -3.076 16.201 hybrid contribution 0.510 0.690 1.344 1.594 sum -1.837 -15.042 -1.732 15.253 Atomic orbital electron populations 1.21884 0.93670 1.02007 1.01480 1.21794 0.95618 0.86807 0.94819 1.60733 1.15052 1.13959 1.42091 1.21747 0.99037 0.93712 0.89820 1.18934 0.94417 0.91903 0.95369 1.21637 1.30909 0.97283 1.08371 0.92299 1.26001 0.95154 0.98777 0.99896 1.70123 1.37097 1.12618 1.37436 0.85353 0.78290 0.78347 0.78772 1.18596 1.20207 1.20220 1.23112 1.00138 0.97613 0.98256 1.22437 1.01440 0.95039 0.96331 1.22365 0.99094 0.98002 0.96346 1.22221 1.00110 0.96528 0.96109 0.92729 0.90338 0.93934 0.84727 0.92354 0.96551 0.99314 0.98946 0.92714 0.93290 0.92250 0.90390 0.91039 0.89799 0.92006 0.90331 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 7.90 71.98 0.57 -3.10 16 2 C 0.10 2.90 0.86 4.25 0.00 2.90 16 3 N -0.69 -25.54 5.96 -466.59 -2.78 -28.32 16 4 C 0.09 3.77 4.97 86.30 0.43 4.20 16 5 C 0.03 1.73 5.23 29.85 0.16 1.89 16 6 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 7 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 9 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 10 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 C -0.15 -4.06 4.80 31.69 0.15 -3.91 16 15 C -0.11 -2.28 6.91 31.91 0.22 -2.06 16 16 C -0.12 -2.32 6.83 31.67 0.22 -2.10 16 17 C -0.11 -2.63 6.19 31.32 0.19 -2.44 16 18 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 19 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 20 H 0.04 1.29 6.41 -2.39 -0.02 1.28 16 21 H 0.33 12.32 8.67 -89.69 -0.78 11.54 16 22 H 0.06 2.58 6.32 -2.39 -0.02 2.56 16 23 H 0.02 0.71 7.04 -2.39 -0.02 0.70 16 24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.05 1.46 7.82 -2.39 -0.02 1.44 16 28 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.65 7.67 -2.38 -0.02 1.63 16 34 H 0.06 1.61 7.90 -2.39 -0.02 1.59 16 Total: -1.00 -64.60 269.22 2.44 -62.17 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.27 Total: 12.83 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 2.64 Total: -35.92 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -2.50 Total: -86.18 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.60 2.44 -62.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042187309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.493 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds