Wall clock time and date at job start Mon Mar 30 2020 01:53:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46904 * 110.01265 * 2 1
4 4 C 1.46899 * 111.00029 * 59.30312 * 3 2 1
5 5 C 1.52997 * 109.47254 * 179.97438 * 4 3 2
6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 3
7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4
8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4
9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5
10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5
11 11 H 1.48499 * 109.46616 * 0.02562 * 10 8 6
12 12 H 1.48501 * 109.47104 * 119.99966 * 10 8 6
13 13 H 1.48489 * 109.47200 * 240.00246 * 10 8 6
14 14 C 1.54264 * 110.03552 * 121.39145 * 2 1 3
15 15 C 1.54964 * 104.16034 * 95.75649 * 14 2 1
16 16 C 1.54898 * 102.77698 * 37.88651 * 15 14 2
17 17 C 1.53873 * 110.03249 * 238.61496 * 2 1 3
18 18 H 1.08995 * 109.47427 * 60.69877 * 1 2 3
19 19 H 1.08999 * 109.46857 * 180.69919 * 1 2 3
20 20 H 1.08998 * 109.46862 * 300.69984 * 1 2 3
21 21 H 1.00908 * 110.99583 * 183.25225 * 3 2 1
22 22 H 1.09002 * 109.47043 * 299.99792 * 4 3 2
23 23 H 1.09001 * 109.47354 * 59.99854 * 4 3 2
24 24 H 1.09002 * 109.47153 * 300.00004 * 5 4 3
25 25 H 1.08998 * 109.47533 * 59.99633 * 5 4 3
26 26 H 0.97002 * 119.99731 * 180.02562 * 9 8 6
27 27 H 1.08999 * 110.48556 * 214.40335 * 14 2 1
28 28 H 1.09000 * 110.48274 * 337.04674 * 14 2 1
29 29 H 1.09001 * 110.71857 * 279.57580 * 15 14 2
30 30 H 1.08993 * 110.92458 * 156.29601 * 15 14 2
31 31 H 1.08997 * 110.48664 * 203.40739 * 16 15 14
32 32 H 1.08997 * 110.48119 * 80.76429 * 16 15 14
33 33 H 1.09006 * 110.03258 * 359.94587 * 17 2 1
34 34 H 1.08998 * 110.03586 * 121.32871 * 17 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0328 1.3803 0.0000
4 6 1.5551 2.1146 1.1793
5 6 2.0986 3.5444 1.1445
6 6 1.6081 4.2978 2.3539
7 1 0.9726 3.8060 3.0754
8 6 1.9714 5.6148 2.5399
9 7 2.7457 6.2136 1.6615
10 14 1.3628 6.5490 4.0387
11 1 0.5127 5.6563 4.8666
12 1 2.5249 7.0089 4.8408
13 1 0.5677 7.7239 3.6004
14 6 2.0585 -0.7549 1.2371
15 6 2.3300 -2.1897 0.7184
16 6 2.8886 -1.9395 -0.7045
17 6 2.0571 -0.7529 -1.2341
18 1 -0.3634 0.5029 -0.8961
19 1 -0.3633 -1.0276 0.0125
20 1 -0.3633 0.5247 0.8836
21 1 3.0403 1.3982 -0.0534
22 1 0.4654 2.1396 1.1749
23 1 1.9035 1.6157 2.0836
24 1 3.1883 3.5190 1.1491
25 1 1.7507 4.0435 0.2402
26 1 3.0017 7.1400 1.7925
27 1 2.9807 -0.2988 1.5972
28 1 1.3059 -0.7694 2.0254
29 1 1.4054 -2.7653 0.6747
30 1 3.0689 -2.6951 1.3401
31 1 2.7416 -2.8185 -1.3321
32 1 3.9449 -1.6748 -0.6585
33 1 1.2229 -1.1191 -1.8326
34 1 2.6853 -0.0939 -1.8335
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042187309.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:53:03
Heat of formation + Delta-G solvation = -46.673827 kcal
Electronic energy + Delta-G solvation = -12765.922435 eV
Core-core repulsion = 10696.549111 eV
Total energy + Delta-G solvation = -2069.373325 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.21460 -36.26329 -34.59911 -31.79746 -29.66316 -29.64406 -26.66281 -25.12450
-22.57932 -21.26619 -19.89728 -18.48570 -17.00602 -16.62923 -16.36764 -15.64081
-14.93705 -14.58099 -14.47169 -14.14368 -13.67985 -13.20548 -13.01858 -12.86654
-12.62719 -12.39632 -12.10595 -11.97752 -11.93265 -11.61199 -11.47492 -11.40896
-11.25872 -11.11610 -10.57772 -9.17668 -8.21566 -6.33259 1.39088 1.39848
1.53247 2.39593 3.11663 3.34060 3.69321 3.80919 4.04740 4.39541
4.46325 4.52610 4.56046 4.57904 4.66031 4.80546 4.94900 4.96346
4.99186 5.07048 5.11672 5.19218 5.23934 5.34811 5.45066 5.46564
5.49642 5.68138 5.80739 6.17345 6.37579 6.60484 6.84504 7.36171
8.90981
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.066449 B = 0.006868 C = 0.006732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 421.271563 B = 4076.172647 C = 4158.170162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.100 3.900
3 N -0.688 5.688
4 C 0.086 3.914
5 C 0.031 3.969
6 C -0.544 4.544
7 H 0.059 0.941
8 C 0.000 4.000
9 N -0.933 5.933
10 Si 0.968 3.032
11 H -0.262 1.262
12 H -0.276 1.276
13 H -0.277 1.277
14 C -0.152 4.152
15 C -0.115 4.115
16 C -0.120 4.120
17 C -0.112 4.112
18 H 0.054 0.946
19 H 0.078 0.922
20 H 0.042 0.958
21 H 0.335 0.665
22 H 0.058 0.942
23 H 0.016 0.984
24 H -0.012 1.012
25 H -0.008 1.008
26 H 0.264 0.736
27 H 0.048 0.952
28 H 0.059 0.941
29 H 0.077 0.923
30 H 0.071 0.929
31 H 0.083 0.917
32 H 0.061 0.939
33 H 0.078 0.922
34 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.911 -16.131 -2.614 16.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.010 3.990
3 N -0.318 5.318
4 C -0.043 4.043
5 C -0.006 4.006
6 C -0.582 4.582
7 H 0.077 0.923
8 C -0.198 4.198
9 N -0.573 5.573
10 Si 0.792 3.208
11 H -0.186 1.186
12 H -0.202 1.202
13 H -0.202 1.202
14 C -0.191 4.191
15 C -0.152 4.152
16 C -0.158 4.158
17 C -0.150 4.150
18 H 0.073 0.927
19 H 0.097 0.903
20 H 0.061 0.939
21 H 0.153 0.847
22 H 0.076 0.924
23 H 0.034 0.966
24 H 0.007 0.993
25 H 0.011 0.989
26 H 0.073 0.927
27 H 0.067 0.933
28 H 0.078 0.922
29 H 0.096 0.904
30 H 0.090 0.910
31 H 0.102 0.898
32 H 0.080 0.920
33 H 0.097 0.903
34 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -2.347 -15.732 -3.076 16.201
hybrid contribution 0.510 0.690 1.344 1.594
sum -1.837 -15.042 -1.732 15.253
Atomic orbital electron populations
1.21884 0.93670 1.02007 1.01480 1.21794 0.95618 0.86807 0.94819
1.60733 1.15052 1.13959 1.42091 1.21747 0.99037 0.93712 0.89820
1.18934 0.94417 0.91903 0.95369 1.21637 1.30909 0.97283 1.08371
0.92299 1.26001 0.95154 0.98777 0.99896 1.70123 1.37097 1.12618
1.37436 0.85353 0.78290 0.78347 0.78772 1.18596 1.20207 1.20220
1.23112 1.00138 0.97613 0.98256 1.22437 1.01440 0.95039 0.96331
1.22365 0.99094 0.98002 0.96346 1.22221 1.00110 0.96528 0.96109
0.92729 0.90338 0.93934 0.84727 0.92354 0.96551 0.99314 0.98946
0.92714 0.93290 0.92250 0.90390 0.91039 0.89799 0.92006 0.90331
0.91905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.66 7.90 71.98 0.57 -3.10 16
2 C 0.10 2.90 0.86 4.25 0.00 2.90 16
3 N -0.69 -25.54 5.96 -466.59 -2.78 -28.32 16
4 C 0.09 3.77 4.97 86.30 0.43 4.20 16
5 C 0.03 1.73 5.23 29.85 0.16 1.89 16
6 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16
7 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16
8 C 0.00 -0.03 5.46 84.65 0.46 0.43 16
9 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16
10 Si 0.97 45.08 29.54 68.60 2.03 47.11 16
11 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16
12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16
13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
14 C -0.15 -4.06 4.80 31.69 0.15 -3.91 16
15 C -0.11 -2.28 6.91 31.91 0.22 -2.06 16
16 C -0.12 -2.32 6.83 31.67 0.22 -2.10 16
17 C -0.11 -2.63 6.19 31.32 0.19 -2.44 16
18 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
19 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
20 H 0.04 1.29 6.41 -2.39 -0.02 1.28 16
21 H 0.33 12.32 8.67 -89.69 -0.78 11.54 16
22 H 0.06 2.58 6.32 -2.39 -0.02 2.56 16
23 H 0.02 0.71 7.04 -2.39 -0.02 0.70 16
24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16
25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16
26 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16
27 H 0.05 1.46 7.82 -2.39 -0.02 1.44 16
28 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16
29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
32 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16
33 H 0.08 1.65 7.67 -2.38 -0.02 1.63 16
34 H 0.06 1.61 7.90 -2.39 -0.02 1.59 16
Total: -1.00 -64.60 269.22 2.44 -62.17
By element:
Atomic # 1 Polarization: 12.56 SS G_CDS: 0.27 Total: 12.83 kcal
Atomic # 6 Polarization: -38.56 SS G_CDS: 2.64 Total: -35.92 kcal
Atomic # 7 Polarization: -83.68 SS G_CDS: -2.50 Total: -86.18 kcal
Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal
Total: -64.60 2.44 -62.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042187309.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.493 kcal
(2) G-P(sol) polarization free energy of solvation -64.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.111 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.674 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds