Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46611 * 2 1 4 4 C 1.50700 * 109.47362 * 239.99289 * 2 1 3 5 5 H 1.07998 * 119.99598 * 239.99722 * 4 2 1 6 6 C 1.37873 * 120.00046 * 60.00334 * 4 2 1 7 7 N 1.31516 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00273 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46836 * 60.00106 * 8 6 4 10 10 H 1.48496 * 109.47362 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47311 * 300.00411 * 8 6 4 12 12 N 1.46906 * 109.46842 * 119.99091 * 2 1 3 13 13 C 1.46847 * 110.99812 * 64.21465 * 12 2 1 14 14 C 1.53034 * 109.52486 * 174.15668 * 13 12 2 15 15 C 1.53126 * 109.27454 * 59.18079 * 14 13 12 16 16 C 1.53000 * 109.52038 * 182.43766 * 15 14 13 17 17 C 1.53114 * 109.16071 * 302.34640 * 15 14 13 18 18 C 1.46848 * 111.00135 * 300.00540 * 12 2 1 19 19 H 1.08995 * 109.47617 * 300.00346 * 1 2 3 20 20 H 1.09006 * 109.46867 * 60.00615 * 1 2 3 21 21 H 1.09006 * 109.47102 * 180.02562 * 1 2 3 22 22 H 0.97005 * 120.00188 * 180.02562 * 7 6 4 23 23 H 1.08999 * 109.46634 * 54.14179 * 13 12 2 24 24 H 1.09006 * 109.46422 * 294.18075 * 13 12 2 25 25 H 1.08997 * 109.50792 * 299.24185 * 14 13 12 26 26 H 1.09006 * 109.50471 * 179.11839 * 14 13 12 27 27 H 1.09001 * 109.52438 * 62.24983 * 15 14 13 28 28 H 1.09011 * 109.46940 * 60.00002 * 16 15 14 29 29 H 1.09003 * 109.46822 * 179.97438 * 16 15 14 30 30 H 1.09000 * 109.47582 * 300.00384 * 16 15 14 31 31 H 1.08994 * 109.50522 * 177.59764 * 17 15 14 32 32 H 1.09009 * 109.50039 * 297.71544 * 17 15 14 33 33 H 1.09000 * 109.46321 * 65.82514 * 18 12 2 34 34 H 1.09002 * 109.46191 * 305.85104 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3227 -1.1199 -4.0078 9 1 1.8281 -2.5202 -4.0079 10 1 1.8272 -0.4205 -5.2203 11 1 3.8077 -1.1195 -4.0075 12 7 2.0196 -0.6923 1.1996 13 6 1.6327 -2.1089 1.1844 14 6 2.2799 -2.8286 2.3697 15 6 1.8214 -2.1689 3.6733 16 6 2.5124 -2.8451 4.8591 17 6 2.1933 -0.6839 3.6430 18 6 1.5486 -0.0264 2.4207 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 0.7091 1.1611 -3.4845 23 1 1.9683 -2.5671 0.2541 24 1 0.5482 -2.1900 1.2583 25 1 3.3647 -2.7597 2.2891 26 1 1.9800 -3.8766 2.3671 27 1 0.7408 -2.2718 3.7731 28 1 3.5927 -2.7388 4.7590 29 1 2.1857 -2.3746 5.7865 30 1 2.2516 -3.9033 4.8766 31 1 1.8316 -0.1996 4.5499 32 1 3.2768 -0.5814 3.5823 33 1 0.4646 -0.1173 2.4889 34 1 1.8233 1.0280 2.3883 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048208980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = -32.535328 kcal Electronic energy + Delta-G solvation = -13278.582796 eV Core-core repulsion = 11209.822563 eV Total energy + Delta-G solvation = -2068.760233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.15224 -36.57925 -34.25233 -31.67960 -30.91623 -27.76332 -27.31765 -23.93317 -23.64084 -21.64711 -20.14802 -18.17609 -17.11025 -15.99061 -15.65529 -15.39906 -15.19588 -15.04108 -14.19516 -13.77967 -13.67126 -13.18007 -13.03908 -12.86703 -12.64756 -12.51811 -12.36316 -12.15856 -11.92568 -11.85723 -11.43338 -11.14738 -10.97573 -10.71919 -10.49404 -8.80488 -8.11448 -6.22709 1.41912 1.43767 1.51364 2.42451 3.17434 3.42239 3.96340 4.00721 4.05945 4.42994 4.53668 4.62840 4.70948 4.72376 4.84565 4.89449 4.91209 4.94729 5.05008 5.11354 5.18356 5.24178 5.31636 5.35681 5.43396 5.57988 5.62131 5.72905 5.80950 6.19533 6.51904 6.81448 6.92550 7.46703 8.94944 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056958 B = 0.009646 C = 0.008743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.470084 B = 2902.080294 C = 3201.846625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.541 5.541 13 C 0.064 3.936 14 C -0.105 4.105 15 C -0.092 4.092 16 C -0.136 4.136 17 C -0.101 4.101 18 C 0.050 3.950 19 H 0.025 0.975 20 H 0.061 0.939 21 H 0.026 0.974 22 H 0.261 0.739 23 H 0.059 0.941 24 H 0.012 0.988 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -5.987 11.223 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.265 5.265 13 C -0.064 4.064 14 C -0.143 4.143 15 C -0.110 4.110 16 C -0.193 4.193 17 C -0.139 4.139 18 C -0.078 4.078 19 H 0.044 0.956 20 H 0.079 0.921 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.031 0.969 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.660 -5.847 11.091 12.647 hybrid contribution -0.842 0.028 -1.246 1.504 sum 0.817 -5.820 9.845 11.466 Atomic orbital electron populations 1.22175 1.00539 0.98807 0.99932 1.19049 0.89902 0.92972 0.87520 0.97883 1.21406 1.30745 1.12516 0.90989 0.92319 1.25731 0.95388 0.95811 1.01940 1.70016 1.37899 1.24206 1.24078 0.85581 0.78739 0.78668 0.78466 1.19592 1.20918 1.19746 1.62167 1.59828 1.02512 1.02036 1.21945 0.96285 0.89247 0.98971 1.21659 1.00555 0.98657 0.93389 1.21170 0.99821 0.94869 0.95177 1.21741 1.00400 1.00422 0.96775 1.21606 1.00805 0.95373 0.96105 1.22101 0.96624 0.97963 0.91130 0.95611 0.92060 0.95468 0.92957 0.92260 0.96940 0.91988 0.90692 0.92045 0.92629 0.91744 0.92014 0.90137 0.91821 0.96152 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 8.28 71.98 0.60 -7.26 16 2 C 0.21 11.25 2.41 44.17 0.11 11.35 16 3 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 4 C -0.52 -29.22 7.86 25.60 0.20 -29.02 16 5 H 0.06 3.28 6.40 -2.91 -0.02 3.27 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.54 -24.06 4.67 -875.50 -4.09 -28.16 16 13 C 0.06 2.56 4.75 86.32 0.41 2.97 16 14 C -0.10 -3.21 5.38 30.65 0.16 -3.05 16 15 C -0.09 -2.42 2.79 -10.71 -0.03 -2.45 16 16 C -0.14 -2.72 9.20 71.98 0.66 -2.05 16 17 C -0.10 -2.90 5.38 30.64 0.16 -2.74 16 18 C 0.05 1.87 4.89 86.32 0.42 2.29 16 19 H 0.02 1.16 6.54 -2.39 -0.02 1.15 16 20 H 0.06 3.42 6.07 -2.38 -0.01 3.41 16 21 H 0.03 1.32 6.63 -2.38 -0.02 1.31 16 22 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 23 H 0.06 2.64 6.02 -2.39 -0.01 2.63 16 24 H 0.01 0.51 6.71 -2.38 -0.02 0.50 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.02 0.77 6.63 -2.39 -0.02 0.76 16 34 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 Total: -1.00 -60.51 257.80 2.37 -58.14 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.05 Total: 6.52 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 3.15 Total: -28.97 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -3.85 Total: -82.08 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.51 2.37 -58.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.601 kcal (2) G-P(sol) polarization free energy of solvation -60.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds