Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48504 * 109.46939 * 269.99900 * 3 2 1 5 5 H 1.48504 * 109.47392 * 29.99821 * 3 2 1 6 6 H 1.48497 * 109.47335 * 149.99870 * 3 2 1 7 7 C 1.37882 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99830 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00149 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47021 * 180.02562 * 13 12 11 15 15 C 1.53786 * 113.61503 * 85.86315 * 14 13 12 16 16 C 1.54049 * 86.98426 * 140.01654 * 15 14 13 17 17 C 1.53781 * 113.61337 * 183.47109 * 14 13 12 18 18 H 0.96998 * 120.00007 * 0.02562 * 1 2 3 19 19 H 1.09008 * 109.46936 * 60.00627 * 9 7 2 20 20 H 1.08990 * 109.47511 * 300.00452 * 9 7 2 21 21 H 1.08998 * 109.47261 * 60.00062 * 10 9 7 22 22 H 1.09003 * 109.47183 * 300.00090 * 10 9 7 23 23 H 1.09008 * 109.47040 * 60.00375 * 11 10 9 24 24 H 1.08990 * 109.47359 * 300.00229 * 11 10 9 25 25 H 1.00901 * 110.99859 * 56.04288 * 12 11 10 26 26 H 1.09000 * 109.47121 * 60.00190 * 13 12 11 27 27 H 1.08997 * 109.47113 * 300.00029 * 13 12 11 28 28 H 1.09002 * 112.85017 * 314.66697 * 14 13 12 29 29 H 1.08992 * 113.61675 * 254.61398 * 15 14 13 30 30 H 1.09000 * 113.60973 * 25.51686 * 15 14 13 31 31 H 1.09005 * 113.62125 * 220.02158 * 16 15 14 32 32 H 1.09003 * 113.61268 * 89.11946 * 16 15 14 33 33 H 1.08999 * 113.61567 * 334.48261 * 17 14 13 34 34 H 1.09000 * 113.61379 * 105.30384 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 5.5514 -2.6367 0.0001 12 7 6.0411 -4.0217 0.0009 13 6 7.5096 -4.0609 0.0016 14 6 7.9808 -5.5166 0.0017 15 6 8.0745 -6.1339 -1.4037 16 6 9.3724 -6.8147 -0.9295 17 6 9.5086 -5.6694 0.0877 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6798 0.8896 20 1 3.8745 -0.6809 -0.8904 21 1 3.6577 -3.1507 -0.8896 22 1 3.6584 -3.1503 0.8903 23 1 5.9148 -2.1228 0.8902 24 1 5.9148 -2.1230 -0.8898 25 1 5.6655 -4.5384 -0.7802 26 1 7.8861 -3.5567 0.8915 27 1 7.8869 -3.5573 -0.8884 28 1 7.4391 -6.1368 0.7158 29 1 7.2695 -6.8336 -1.6279 30 1 8.2304 -5.3992 -2.1937 31 1 10.1603 -6.8257 -1.6827 32 1 9.2112 -7.7899 -0.4700 33 1 10.0558 -4.8081 -0.2954 34 1 9.8606 -5.9931 1.0672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578393.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = -5.483047 kcal Electronic energy + Delta-G solvation = -12071.128291 eV Core-core repulsion = 10003.541132 eV Total energy + Delta-G solvation = -2067.587158 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.09910 -36.04042 -33.38203 -31.46001 -28.26286 -25.89177 -25.49340 -22.49571 -21.81561 -20.07256 -19.41418 -16.71374 -16.10795 -15.33324 -14.92244 -14.46767 -13.98072 -13.79239 -12.93007 -12.62762 -12.59916 -12.29891 -11.99342 -11.62193 -11.44952 -10.90470 -10.75139 -10.67825 -10.44317 -10.26955 -9.89848 -9.69233 -9.49028 -9.13397 -8.50439 -8.18923 -6.00793 -3.98324 3.32740 3.39964 3.44315 4.24727 4.48330 4.48893 4.58648 4.68912 4.83557 5.31890 5.33293 5.42746 5.53957 5.56795 5.66221 5.71028 5.73703 5.79681 5.87254 5.93271 6.13270 6.21652 6.37868 6.59357 6.63056 6.95728 7.27447 7.40024 7.48201 7.64050 7.84120 8.58859 9.04919 9.61956 11.12872 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.088858 B = 0.005094 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.034574 B = 5495.860287 C = 5676.825829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.056 3.944 12 N -0.691 5.691 13 C 0.067 3.933 14 C -0.108 4.108 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.137 4.137 18 H 0.262 0.738 19 H 0.016 0.984 20 H 0.009 0.991 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.022 0.978 25 H 0.338 0.662 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.186 -9.779 -1.532 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.073 4.073 12 N -0.321 5.321 13 C -0.062 4.062 14 C -0.126 4.126 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.175 4.175 18 H 0.072 0.928 19 H 0.034 0.966 20 H 0.027 0.973 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.156 0.844 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.981 -9.718 -0.842 20.456 hybrid contribution 0.521 1.241 -0.958 1.652 sum 18.502 -8.476 -1.800 20.430 Atomic orbital electron populations 1.69919 1.06298 1.26813 1.51412 1.25045 0.94738 0.99176 0.94657 0.86762 0.80371 0.83623 0.78421 1.20382 1.21396 1.19041 1.21167 0.89552 0.94465 1.50464 0.91023 1.19548 0.97143 0.92354 0.96086 1.21444 0.91168 0.99599 1.01548 1.22151 0.97602 0.87796 0.99722 1.60520 1.06815 1.14886 1.49876 1.21945 0.88749 0.95448 1.00105 1.22596 0.95736 0.96552 0.97741 1.23051 0.97897 0.99978 0.96991 1.22836 0.98062 0.98050 0.98991 1.22910 0.96305 0.98744 0.99518 0.92795 0.96616 0.97318 0.93083 0.91943 0.91584 0.95945 0.84448 0.91273 0.95645 0.88411 0.91415 0.90433 0.91758 0.90283 0.90322 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.05 5.41 -26.73 -0.14 -2.19 16 11 C 0.06 0.95 5.69 -3.82 -0.02 0.93 16 12 N -0.69 -10.13 6.50 -113.78 -0.74 -10.87 16 13 C 0.07 0.82 5.51 -3.82 -0.02 0.80 16 14 C -0.11 -1.11 3.89 -89.80 -0.35 -1.46 16 15 C -0.14 -1.32 7.65 -25.77 -0.20 -1.52 16 16 C -0.14 -1.16 8.09 -25.78 -0.21 -1.37 16 17 C -0.14 -1.19 7.64 -25.92 -0.20 -1.39 16 18 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 19 H 0.02 0.38 7.20 -51.92 -0.37 0.01 16 20 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 23 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.34 4.70 8.73 -39.29 -0.34 4.36 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.31 7.87 -51.93 -0.41 -0.10 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -30.54 276.85 -8.31 -38.85 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.16 Total: -1.59 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.68 Total: -20.36 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.03 Total: -38.58 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.54 -8.31 -38.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578393.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.371 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds