Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48504 * 109.46939 * 269.99900 * 3 2 1 5 5 H 1.48504 * 109.47392 * 29.99821 * 3 2 1 6 6 H 1.48497 * 109.47335 * 149.99870 * 3 2 1 7 7 C 1.37882 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99830 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00149 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47021 * 180.02562 * 13 12 11 15 15 C 1.53786 * 113.61503 * 85.86315 * 14 13 12 16 16 C 1.54049 * 86.98426 * 140.01654 * 15 14 13 17 17 C 1.53781 * 113.61337 * 183.47109 * 14 13 12 18 18 H 0.96998 * 120.00007 * 0.02562 * 1 2 3 19 19 H 1.09008 * 109.46936 * 60.00627 * 9 7 2 20 20 H 1.08990 * 109.47511 * 300.00452 * 9 7 2 21 21 H 1.08998 * 109.47261 * 60.00062 * 10 9 7 22 22 H 1.09003 * 109.47183 * 300.00090 * 10 9 7 23 23 H 1.09008 * 109.47040 * 60.00375 * 11 10 9 24 24 H 1.08990 * 109.47359 * 300.00229 * 11 10 9 25 25 H 1.00901 * 110.99859 * 56.04288 * 12 11 10 26 26 H 1.09000 * 109.47121 * 60.00190 * 13 12 11 27 27 H 1.08997 * 109.47113 * 300.00029 * 13 12 11 28 28 H 1.09002 * 112.85017 * 314.66697 * 14 13 12 29 29 H 1.08992 * 113.61675 * 254.61398 * 15 14 13 30 30 H 1.09000 * 113.60973 * 25.51686 * 15 14 13 31 31 H 1.09005 * 113.62125 * 220.02158 * 16 15 14 32 32 H 1.09003 * 113.61268 * 89.11946 * 16 15 14 33 33 H 1.08999 * 113.61567 * 334.48261 * 17 14 13 34 34 H 1.09000 * 113.61379 * 105.30384 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 5.5514 -2.6367 0.0001 12 7 6.0411 -4.0217 0.0009 13 6 7.5096 -4.0609 0.0016 14 6 7.9808 -5.5166 0.0017 15 6 8.0745 -6.1339 -1.4037 16 6 9.3724 -6.8147 -0.9295 17 6 9.5086 -5.6694 0.0877 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6798 0.8896 20 1 3.8745 -0.6809 -0.8904 21 1 3.6577 -3.1507 -0.8896 22 1 3.6584 -3.1503 0.8903 23 1 5.9148 -2.1228 0.8902 24 1 5.9148 -2.1230 -0.8898 25 1 5.6655 -4.5384 -0.7802 26 1 7.8861 -3.5567 0.8915 27 1 7.8869 -3.5573 -0.8884 28 1 7.4391 -6.1368 0.7158 29 1 7.2695 -6.8336 -1.6279 30 1 8.2304 -5.3992 -2.1937 31 1 10.1603 -6.8257 -1.6827 32 1 9.2112 -7.7899 -0.4700 33 1 10.0558 -4.8081 -0.2954 34 1 9.8606 -5.9931 1.0672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578393.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = -24.973885 kcal Electronic energy + Delta-G solvation = -12071.973477 eV Core-core repulsion = 10003.541132 eV Total energy + Delta-G solvation = -2068.432345 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.88452 -37.39110 -35.28910 -33.33903 -29.69597 -27.17729 -26.41205 -23.94711 -22.95900 -21.82350 -20.19014 -18.90542 -17.17461 -16.48969 -16.21495 -15.87431 -15.38476 -15.13622 -14.68340 -14.04751 -13.69592 -13.54610 -13.29677 -12.89210 -12.70786 -12.44373 -12.34916 -11.81945 -11.70941 -11.50108 -11.38292 -11.31058 -11.04897 -10.88489 -10.76683 -9.35134 -8.29730 -6.34266 1.35588 1.38113 1.50485 2.36487 3.05385 3.20564 3.74359 3.84436 3.95461 4.02404 4.20424 4.30808 4.50047 4.61496 4.66395 4.81018 4.87276 4.88380 4.91848 4.97092 5.05557 5.10001 5.10496 5.17741 5.38866 5.50933 5.60046 5.64612 5.66272 6.12377 6.29520 6.49632 6.73985 7.30377 8.87412 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.088858 B = 0.005094 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.034574 B = 5495.860287 C = 5676.825829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.011 4.011 10 C -0.091 4.091 11 C 0.069 3.931 12 N -0.697 5.697 13 C 0.069 3.931 14 C -0.110 4.110 15 C -0.143 4.143 16 C -0.136 4.136 17 C -0.132 4.132 18 H 0.267 0.733 19 H 0.020 0.980 20 H 0.019 0.981 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.342 0.658 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.704 -9.213 -1.775 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.061 4.061 12 N -0.328 5.328 13 C -0.060 4.060 14 C -0.129 4.129 15 C -0.181 4.181 16 C -0.174 4.174 17 C -0.170 4.170 18 H 0.075 0.925 19 H 0.039 0.961 20 H 0.037 0.963 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.160 0.840 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.518 -9.177 -1.087 22.504 hybrid contribution -0.337 0.967 -0.880 1.350 sum 20.181 -8.210 -1.966 21.876 Atomic orbital electron populations 1.70077 1.08390 1.28228 1.52691 1.26084 0.95679 1.03740 0.94024 0.85584 0.79456 0.77877 0.79273 1.19007 1.20855 1.16957 1.21529 0.92283 0.93088 1.50456 0.95280 1.19496 0.93804 0.95036 0.96510 1.21275 0.94030 0.96936 1.00708 1.21892 0.94595 0.89359 1.00208 1.60467 1.08588 1.13442 1.50316 1.21999 0.86922 0.96872 1.00230 1.22575 0.96879 0.95135 0.98306 1.23064 0.98602 1.00039 0.96345 1.22828 0.97574 0.98041 0.98941 1.22908 0.94847 0.99163 1.00106 0.92457 0.96141 0.96274 0.93490 0.93348 0.91380 0.95137 0.84001 0.91443 0.95090 0.89293 0.91604 0.90408 0.90787 0.89736 0.89845 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 2 C 0.00 0.07 5.47 84.66 0.46 0.53 16 3 Si 0.96 45.01 27.47 68.60 1.88 46.90 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 7 C -0.54 -32.01 9.66 25.60 0.25 -31.77 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 10 C -0.09 -3.72 5.41 30.59 0.17 -3.55 16 11 C 0.07 2.21 5.69 86.30 0.49 2.70 16 12 N -0.70 -19.40 6.50 -513.89 -3.34 -22.74 16 13 C 0.07 1.54 5.51 86.30 0.48 2.02 16 14 C -0.11 -2.07 3.89 -10.26 -0.04 -2.11 16 15 C -0.14 -2.40 7.65 31.21 0.24 -2.16 16 16 C -0.14 -1.91 8.09 31.21 0.25 -1.66 16 17 C -0.13 -2.00 7.64 31.12 0.24 -1.76 16 18 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 19 H 0.02 0.96 7.20 -2.38 -0.02 0.94 16 20 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 21 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.07 2.17 8.14 -2.38 -0.02 2.16 16 24 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.34 9.06 8.73 -89.69 -0.78 8.28 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.03 0.67 7.87 -2.39 -0.02 0.65 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.31 7.92 -2.39 -0.02 1.29 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -65.55 276.85 1.70 -63.85 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.20 Total: 11.02 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 2.65 Total: -38.15 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.04 Total: -83.62 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Total: -65.55 1.70 -63.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578393.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.878 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds