Wall clock time and date at job start Mon Mar 30 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37491 * 119.99689 * 2 1 4 4 N 1.30338 * 120.00093 * 355.81934 * 3 2 1 5 5 N 1.37487 * 119.99927 * 175.81759 * 3 2 1 6 6 C 1.46495 * 120.00216 * 218.58633 * 5 3 2 7 7 C 1.50699 * 109.46839 * 90.00031 * 6 5 3 8 8 H 1.08002 * 120.00256 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99955 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00021 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00207 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.46896 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.46942 * 120.00016 * 11 9 7 14 14 H 1.48505 * 109.47144 * 240.00124 * 11 9 7 15 15 C 1.46508 * 119.99722 * 38.58953 * 5 3 2 16 16 C 1.52999 * 117.49828 * 7.12366 * 15 5 3 17 17 C 1.53000 * 117.49796 * 298.46306 * 15 5 3 18 18 H 1.09000 * 109.47655 * 60.27404 * 1 2 3 19 19 H 1.09002 * 109.47126 * 180.27761 * 1 2 3 20 20 H 1.09011 * 109.46974 * 300.27167 * 1 2 3 21 21 H 0.96994 * 120.00113 * 179.72789 * 2 1 3 22 22 H 0.97002 * 119.99625 * 180.02562 * 4 3 2 23 23 H 1.08999 * 109.47375 * 210.00045 * 6 5 3 24 24 H 1.08996 * 109.46949 * 330.00531 * 6 5 3 25 25 H 0.97001 * 120.00359 * 179.97438 * 10 9 7 26 26 H 1.08995 * 115.54583 * 152.79929 * 15 5 3 27 27 H 1.08992 * 117.50115 * 0.02562 * 16 15 5 28 28 H 1.09005 * 117.49333 * 145.02432 * 16 15 5 29 29 H 1.09000 * 117.49794 * 214.98263 * 17 15 5 30 30 H 1.09007 * 117.50176 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1523 1.1907 0.0000 4 7 1.5032 2.3180 -0.0823 5 7 3.5245 1.1924 0.0868 6 6 4.2066 2.2131 0.8861 7 6 4.3694 1.7180 2.3001 8 1 4.0019 0.7406 2.5757 9 6 4.9885 2.5124 3.2417 10 7 5.4365 3.7024 2.9060 11 14 5.1909 1.8985 4.9943 12 1 4.6057 0.5389 5.1132 13 1 6.6348 1.8482 5.3375 14 1 4.4926 2.8206 5.9256 15 6 4.3044 0.1733 -0.6200 16 6 3.5508 -0.7606 -1.5692 17 6 4.0741 -1.2884 -0.2310 18 1 -0.3634 0.5095 -0.8924 19 1 -0.3633 -1.0277 0.0050 20 1 -0.3633 0.5181 0.8876 21 1 1.9499 -0.8400 0.0040 22 1 1.9883 3.1580 -0.0827 23 1 5.1879 2.4151 0.4566 24 1 3.6152 3.1286 0.8876 25 1 5.8718 4.2615 3.5685 26 1 5.3162 0.4662 -0.9001 27 1 2.4750 -0.6166 -1.6681 28 1 4.0672 -1.0825 -2.4736 29 1 4.9344 -1.9572 -0.2555 30 1 3.3426 -1.4918 0.5512 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052018973.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:23 Heat of formation + Delta-G solvation = 78.423283 kcal Electronic energy + Delta-G solvation = -12836.890528 eV Core-core repulsion = 10669.401477 eV Total energy + Delta-G solvation = -2167.489050 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.04041 -35.29132 -34.11684 -32.36385 -30.04386 -27.15278 -25.65872 -22.60256 -22.05580 -21.49219 -19.51676 -16.56182 -16.13247 -15.92135 -14.70681 -14.50668 -14.30492 -13.90793 -13.12782 -12.60512 -12.28484 -11.71815 -11.40752 -11.26106 -11.06293 -10.84293 -10.68406 -10.32193 -10.17566 -9.89634 -9.52788 -8.62645 -8.47939 -7.66801 -6.95537 -6.05159 -4.13209 3.26934 3.34600 3.38482 3.56797 3.77709 4.30097 4.36978 4.50136 5.21222 5.25224 5.32146 5.39935 5.60346 5.87947 6.02250 6.09644 6.24178 6.32019 6.36010 6.48539 6.98959 7.26314 7.67150 7.81878 7.90190 8.16300 8.23781 8.64582 8.93819 9.51057 9.64192 10.99232 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035943 B = 0.011189 C = 0.010491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.829907 B = 2501.767058 C = 2668.389686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.745 5.745 3 C 0.647 3.353 4 N -0.821 5.821 5 N -0.635 5.635 6 C 0.265 3.735 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.118 3.882 16 C -0.219 4.219 17 C -0.214 4.214 18 H 0.051 0.949 19 H 0.057 0.943 20 H 0.051 0.949 21 H 0.401 0.599 22 H 0.341 0.659 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -8.839 -6.246 11.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.394 5.394 3 C 0.281 3.719 4 N -0.466 5.466 5 N -0.361 5.361 6 C 0.145 3.855 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.534 5.534 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.010 3.990 16 C -0.257 4.257 17 C -0.254 4.254 18 H 0.069 0.931 19 H 0.076 0.924 20 H 0.069 0.931 21 H 0.241 0.759 22 H 0.158 0.842 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.562 -8.339 -6.211 11.355 hybrid contribution 1.411 -0.467 1.222 1.924 sum -3.151 -8.807 -4.990 10.601 Atomic orbital electron populations 1.21204 0.79887 0.99947 1.01816 1.44665 1.06253 1.05215 1.83236 1.18654 0.79244 0.87415 0.86627 1.69488 1.39643 0.99334 1.38090 1.47219 1.01899 1.32991 1.53991 1.19115 0.92076 0.85390 0.88908 1.21641 1.37793 1.02661 0.94706 0.92328 1.24963 0.95396 0.94810 0.99000 1.69936 1.39475 1.09393 1.34623 0.86458 0.77687 0.78898 0.84484 1.19839 1.20947 1.20944 1.21378 0.96152 0.84817 0.96669 1.23726 1.02156 1.05671 0.94194 1.23556 1.03711 1.00664 0.97501 0.93077 0.92436 0.93077 0.75915 0.84199 0.94988 0.95052 0.92753 0.86183 0.87428 0.88733 0.88683 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.71 10.70 59.84 0.64 2.35 16 2 N -0.74 -12.91 4.26 -68.59 -0.29 -13.20 16 3 C 0.65 13.70 7.36 -320.08 -2.35 11.34 16 4 N -0.82 -18.47 13.15 30.15 0.40 -18.07 16 5 N -0.64 -13.73 2.87 -169.20 -0.49 -14.22 16 6 C 0.27 6.81 5.38 -5.20 -0.03 6.78 16 7 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 11 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 15 C 0.12 2.11 6.58 -67.93 -0.45 1.66 16 16 C -0.22 -3.11 9.39 -26.69 -0.25 -3.37 16 17 C -0.21 -3.22 9.69 -26.69 -0.26 -3.47 16 18 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 19 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 20 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 21 H 0.40 6.27 4.13 -40.82 -0.17 6.10 16 22 H 0.34 7.92 7.25 -40.82 -0.30 7.63 16 23 H 0.03 0.85 8.06 -51.93 -0.42 0.43 16 24 H 0.03 0.87 6.49 -51.93 -0.34 0.53 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.12 2.05 8.13 -51.93 -0.42 1.62 16 27 H 0.11 1.60 5.46 -51.93 -0.28 1.31 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.45 6.38 -51.93 -0.33 1.12 16 LS Contribution 251.11 15.07 3.78 3.78 Total: -1.00 -30.29 251.11 -7.92 -38.21 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -3.92 Total: 10.45 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -3.12 Total: 1.79 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: 0.35 Total: -70.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.29 -7.92 -38.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052018973.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.636 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds