Wall clock time and date at job start Mon Mar 30 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99794 * 2 1 4 4 C 1.50697 * 109.47338 * 270.00097 * 3 2 1 5 5 H 1.07999 * 119.99642 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99770 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00241 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46962 * 89.99593 * 8 6 4 10 10 H 1.48494 * 109.47525 * 209.99709 * 8 6 4 11 11 H 1.48501 * 109.47123 * 329.99786 * 8 6 4 12 12 C 1.37485 * 120.00247 * 180.02562 * 2 1 3 13 13 N 1.30342 * 120.00160 * 179.97438 * 12 2 1 14 14 N 1.37482 * 119.99686 * 0.02562 * 12 2 1 15 15 C 1.46496 * 120.00003 * 180.02562 * 14 12 2 16 16 C 1.53001 * 117.49981 * 223.74438 * 15 14 12 17 17 C 1.53002 * 117.50265 * 155.08330 * 15 14 12 18 18 H 1.09001 * 109.47095 * 270.00113 * 1 2 3 19 19 H 1.09003 * 109.47296 * 29.99925 * 1 2 3 20 20 H 1.08997 * 109.47026 * 149.99478 * 1 2 3 21 21 H 1.08996 * 109.47068 * 30.00278 * 3 2 1 22 22 H 1.09006 * 109.46983 * 149.99822 * 3 2 1 23 23 H 0.97002 * 120.00406 * 180.02562 * 7 6 4 24 24 H 0.97001 * 119.99703 * 179.97438 * 13 12 2 25 25 H 0.97005 * 120.00191 * 359.97438 * 14 12 2 26 26 H 1.09001 * 115.54818 * 9.41274 * 15 14 12 27 27 H 1.08998 * 117.49905 * 359.97438 * 16 15 14 28 28 H 1.08995 * 117.50163 * 145.01621 * 16 15 14 29 29 H 1.08999 * 117.49836 * 214.97529 * 17 15 14 30 30 H 1.08996 * 117.49590 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6730 8 14 3.4388 3.4166 -3.4337 9 1 2.3090 4.2597 -3.9008 10 1 4.6992 4.1991 -3.4961 11 1 3.5559 2.2193 -4.3045 12 6 2.1525 -1.1906 -0.0005 13 7 3.4559 -1.1906 -0.0010 14 7 1.4650 -2.3812 -0.0016 15 6 2.1975 -3.6499 -0.0016 16 6 1.7024 -4.7516 -0.9409 17 6 1.4844 -4.8775 0.5691 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5139 21 1 1.6084 2.0284 0.5139 22 1 3.1499 1.1385 0.5139 23 1 4.0309 4.4436 -0.8502 24 1 3.9408 -2.0307 -0.0010 25 1 0.4950 -2.3813 -0.0016 26 1 3.2726 -3.5720 0.1601 27 1 0.8314 -4.5325 -1.5585 28 1 2.4516 -5.3986 -1.3968 29 1 2.0905 -5.6073 1.1058 30 1 0.4705 -4.7410 0.9449 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052036365.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:53 Heat of formation + Delta-G solvation = 71.922070 kcal Electronic energy + Delta-G solvation = -12416.426918 eV Core-core repulsion = 10248.655954 eV Total energy + Delta-G solvation = -2167.770964 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.64315 -36.52312 -33.37464 -32.09265 -30.30594 -27.40833 -25.27349 -23.08390 -22.42733 -21.23296 -18.76306 -17.27056 -16.45264 -16.19586 -14.81880 -14.40396 -14.10812 -13.86314 -12.97304 -12.51307 -12.25734 -12.02357 -11.63411 -11.57739 -11.04917 -10.84041 -10.49770 -10.44557 -10.40502 -9.94595 -9.35940 -8.38691 -8.21309 -7.79453 -6.83219 -5.86649 -3.90138 3.36480 3.38548 3.44976 3.50675 3.67316 4.14595 4.40951 4.59054 4.80774 4.91962 4.97846 5.45613 5.54424 5.61314 5.70024 5.84794 6.00200 6.01377 6.25018 6.66514 7.03375 7.15916 7.58318 7.89313 8.07463 8.23975 8.47297 8.83928 9.13671 9.69018 9.77491 11.19899 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051067 B = 0.008253 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.167885 B = 3391.893090 C = 3547.026183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.603 5.603 3 C 0.270 3.730 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.058 3.942 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.636 3.364 13 N -0.810 5.810 14 N -0.754 5.754 15 C 0.102 3.898 16 C -0.201 4.201 17 C -0.195 4.195 18 H 0.036 0.964 19 H 0.074 0.926 20 H 0.044 0.956 21 H 0.024 0.976 22 H 0.052 0.948 23 H 0.260 0.740 24 H 0.319 0.681 25 H 0.385 0.615 26 H 0.127 0.873 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -13.198 1.577 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.326 5.326 3 C 0.150 3.850 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.143 4.143 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.270 3.730 13 N -0.458 5.458 14 N -0.399 5.399 15 C -0.007 4.007 16 C -0.240 4.240 17 C -0.234 4.234 18 H 0.055 0.945 19 H 0.092 0.908 20 H 0.063 0.937 21 H 0.042 0.958 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.136 0.864 25 H 0.220 0.780 26 H 0.145 0.855 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.720 -12.154 1.627 13.531 hybrid contribution -0.583 -0.753 -1.098 1.454 sum -6.303 -12.908 0.528 14.374 Atomic orbital electron populations 1.21401 0.81605 1.01771 0.99660 1.46300 1.03828 1.03852 1.78635 1.19151 0.92384 0.76534 0.96893 1.21500 1.35399 1.05546 0.92759 0.92855 1.24900 0.95756 0.96621 0.96983 1.69936 1.39095 1.14392 1.30446 0.86561 0.77491 0.78411 0.85257 1.20934 1.21255 1.20130 1.18932 0.86883 0.79349 0.87790 1.70044 1.01831 1.32183 1.41786 1.45097 1.08295 1.02883 1.83641 1.21193 0.96714 0.79972 1.02777 1.23448 1.04142 1.03561 0.92871 1.23359 1.02356 1.01215 0.96428 0.94520 0.90754 0.93725 0.95824 0.92955 0.93002 0.86408 0.77979 0.85523 0.88807 0.88385 0.88280 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.26 59.85 0.61 2.31 16 2 N -0.60 -13.35 2.93 -184.71 -0.54 -13.89 16 3 C 0.27 7.28 5.17 -5.19 -0.03 7.25 16 4 C -0.51 -14.95 9.39 -34.44 -0.32 -15.28 16 5 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 8 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.64 13.40 8.40 -320.09 -2.69 10.71 16 13 N -0.81 -18.82 12.76 30.15 0.38 -18.44 16 14 N -0.75 -12.00 5.54 -55.29 -0.31 -12.30 16 15 C 0.10 1.36 6.39 -67.93 -0.43 0.92 16 16 C -0.20 -2.17 10.46 -26.69 -0.28 -2.45 16 17 C -0.19 -1.97 10.46 -26.69 -0.28 -2.25 16 18 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 19 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 20 H 0.04 0.63 6.42 -51.93 -0.33 0.29 16 21 H 0.02 0.65 8.07 -51.93 -0.42 0.23 16 22 H 0.05 1.58 7.36 -51.93 -0.38 1.19 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 24 H 0.32 6.46 6.36 -40.82 -0.26 6.20 16 25 H 0.39 5.35 6.70 -40.82 -0.27 5.07 16 26 H 0.13 1.73 6.10 -51.93 -0.32 1.41 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -32.71 257.27 -8.45 -41.16 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.06 Total: 5.93 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -3.52 Total: 2.83 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: 0.27 Total: -71.30 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.71 -8.45 -41.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052036365.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.077 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds