Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99794 * 2 1 4 4 C 1.50697 * 109.47338 * 270.00097 * 3 2 1 5 5 H 1.07999 * 119.99642 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99770 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00241 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46962 * 89.99593 * 8 6 4 10 10 H 1.48494 * 109.47525 * 209.99709 * 8 6 4 11 11 H 1.48501 * 109.47123 * 329.99786 * 8 6 4 12 12 C 1.37485 * 120.00247 * 180.02562 * 2 1 3 13 13 N 1.30342 * 120.00160 * 179.97438 * 12 2 1 14 14 N 1.37482 * 119.99686 * 0.02562 * 12 2 1 15 15 C 1.46496 * 120.00003 * 180.02562 * 14 12 2 16 16 C 1.53001 * 117.49981 * 223.74438 * 15 14 12 17 17 C 1.53002 * 117.50265 * 155.08330 * 15 14 12 18 18 H 1.09001 * 109.47095 * 270.00113 * 1 2 3 19 19 H 1.09003 * 109.47296 * 29.99925 * 1 2 3 20 20 H 1.08997 * 109.47026 * 149.99478 * 1 2 3 21 21 H 1.08996 * 109.47068 * 30.00278 * 3 2 1 22 22 H 1.09006 * 109.46983 * 149.99822 * 3 2 1 23 23 H 0.97002 * 120.00406 * 180.02562 * 7 6 4 24 24 H 0.97001 * 119.99703 * 179.97438 * 13 12 2 25 25 H 0.97005 * 120.00191 * 359.97438 * 14 12 2 26 26 H 1.09001 * 115.54818 * 9.41274 * 15 14 12 27 27 H 1.08998 * 117.49905 * 359.97438 * 16 15 14 28 28 H 1.08995 * 117.50163 * 145.01621 * 16 15 14 29 29 H 1.08999 * 117.49836 * 214.97529 * 17 15 14 30 30 H 1.08996 * 117.49590 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6730 8 14 3.4388 3.4166 -3.4337 9 1 2.3090 4.2597 -3.9008 10 1 4.6992 4.1991 -3.4961 11 1 3.5559 2.2193 -4.3045 12 6 2.1525 -1.1906 -0.0005 13 7 3.4559 -1.1906 -0.0010 14 7 1.4650 -2.3812 -0.0016 15 6 2.1975 -3.6499 -0.0016 16 6 1.7024 -4.7516 -0.9409 17 6 1.4844 -4.8775 0.5691 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5139 21 1 1.6084 2.0284 0.5139 22 1 3.1499 1.1385 0.5139 23 1 4.0309 4.4436 -0.8502 24 1 3.9408 -2.0307 -0.0010 25 1 0.4950 -2.3813 -0.0016 26 1 3.2726 -3.5720 0.1601 27 1 0.8314 -4.5325 -1.5585 28 1 2.4516 -5.3986 -1.3968 29 1 2.0905 -5.6073 1.1058 30 1 0.4705 -4.7410 0.9449 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052036365.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = 51.535785 kcal Electronic energy + Delta-G solvation = -12417.310933 eV Core-core repulsion = 10248.655954 eV Total energy + Delta-G solvation = -2168.654980 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.99375 -37.85108 -35.18846 -33.98619 -31.82336 -29.37859 -26.90344 -24.96181 -23.24017 -22.56379 -20.28459 -18.74877 -18.53544 -17.70280 -16.60251 -15.74433 -15.52904 -15.44778 -14.64667 -14.06037 -13.68577 -13.43872 -13.21361 -13.01863 -12.71672 -12.42852 -12.40744 -12.07486 -11.86815 -11.39253 -11.34718 -10.54240 -9.96407 -9.16317 -8.60475 -8.05916 -6.22670 1.39227 1.42373 1.52448 1.95988 2.26880 2.46123 3.00851 3.05259 3.18457 3.84579 4.01387 4.11334 4.29037 4.68405 4.70609 4.77177 4.89200 5.01854 5.04084 5.22792 5.23032 5.43749 5.73986 5.83544 6.20715 6.28795 6.48039 6.87488 7.29769 7.45820 8.17550 8.95926 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051067 B = 0.008253 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.167885 B = 3391.893090 C = 3547.026183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.617 5.617 3 C 0.288 3.712 4 C -0.526 4.526 5 H 0.045 0.955 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.634 3.366 13 N -0.861 5.861 14 N -0.739 5.739 15 C 0.062 3.938 16 C -0.188 4.188 17 C -0.167 4.167 18 H 0.060 0.940 19 H 0.066 0.934 20 H 0.076 0.924 21 H 0.011 0.989 22 H 0.012 0.988 23 H 0.264 0.736 24 H 0.329 0.671 25 H 0.397 0.603 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.823 -14.666 0.720 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.340 5.340 3 C 0.166 3.834 4 C -0.565 4.565 5 H 0.063 0.937 6 C -0.192 4.192 7 N -0.572 5.572 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.268 3.732 13 N -0.512 5.512 14 N -0.385 5.385 15 C -0.046 4.046 16 C -0.228 4.228 17 C -0.206 4.206 18 H 0.078 0.922 19 H 0.085 0.915 20 H 0.095 0.905 21 H 0.029 0.971 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.146 0.854 25 H 0.234 0.766 26 H 0.133 0.867 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.040 -13.684 0.775 15.408 hybrid contribution -0.216 -0.385 -0.782 0.898 sum -7.256 -14.069 -0.007 15.830 Atomic orbital electron populations 1.21629 0.78462 1.02980 1.01531 1.46197 1.05717 1.02872 1.79168 1.18559 0.90992 0.78552 0.95331 1.21713 1.35657 1.05740 0.93390 0.93681 1.25777 0.95361 0.96664 1.01436 1.70055 1.39617 1.14838 1.32703 0.85477 0.77893 0.77960 0.79757 1.19181 1.20723 1.20182 1.18843 0.86943 0.80420 0.86976 1.69995 1.03710 1.33720 1.43821 1.44851 1.08777 1.02083 1.82755 1.21444 0.96533 0.79750 1.06824 1.23509 1.04187 1.01548 0.93529 1.23446 1.02584 0.98488 0.96035 0.92204 0.91519 0.90548 0.97061 0.96976 0.92704 0.85354 0.76575 0.86675 0.88527 0.87092 0.86464 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.14 10.26 127.77 1.31 4.45 16 2 N -0.62 -27.39 2.93 -738.31 -2.16 -29.56 16 3 C 0.29 16.00 5.17 85.63 0.44 16.44 16 4 C -0.53 -31.18 9.39 25.60 0.24 -30.94 16 5 H 0.04 2.69 7.81 -2.91 -0.02 2.66 16 6 C 0.01 0.33 5.46 84.65 0.46 0.79 16 7 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 8 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 C 0.63 26.74 8.40 260.54 2.19 28.93 16 13 N -0.86 -41.05 12.76 -58.53 -0.75 -41.80 16 14 N -0.74 -22.42 5.54 -328.82 -1.82 -24.25 16 15 C 0.06 1.54 6.39 44.99 0.29 1.83 16 16 C -0.19 -3.53 10.46 30.62 0.32 -3.21 16 17 C -0.17 -2.82 10.46 30.62 0.32 -2.50 16 18 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 19 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 20 H 0.08 1.95 6.42 -2.39 -0.02 1.94 16 21 H 0.01 0.65 8.07 -2.39 -0.02 0.63 16 22 H 0.01 0.77 7.36 -2.38 -0.02 0.75 16 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.33 13.72 6.36 -92.71 -0.59 13.13 16 25 H 0.40 10.00 6.70 -92.70 -0.62 9.38 16 26 H 0.12 3.11 6.10 -2.39 -0.01 3.09 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.12 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -71.63 257.27 3.09 -68.54 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.07 Total: 20.34 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.57 Total: 15.78 kcal Atomic # 7 Polarization: -148.58 SS G_CDS: -4.45 Total: -153.03 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -71.63 3.09 -68.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052036365.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.079 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds