Wall clock time and date at job start Mon Mar 30 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.48533 * 110.99670 * 52.60024 * 13 12 11 15 15 C 1.54936 * 103.22827 * 159.72645 * 14 13 12 16 16 C 1.54602 * 102.91755 * 322.58844 * 15 14 13 17 17 C 1.47895 * 111.00585 * 169.99973 * 13 12 11 18 18 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 20 20 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 21 21 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 22 22 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 23 23 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 24 24 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 25 25 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 26 26 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 27 27 H 1.09002 * 110.67270 * 278.16471 * 14 13 12 28 28 H 1.08998 * 110.66667 * 41.29259 * 14 13 12 29 29 H 1.09002 * 110.72666 * 204.23420 * 15 14 13 30 30 H 1.08998 * 110.72369 * 80.94172 * 15 14 13 31 31 H 1.09001 * 110.30688 * 263.03605 * 16 15 14 32 32 H 1.08996 * 110.30747 * 140.87557 * 16 15 14 33 33 H 1.08994 * 109.91810 * 333.51090 * 17 13 12 34 34 H 1.08999 * 109.91451 * 94.60787 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 7 1.7402 -7.4222 0.0035 14 6 0.7443 -7.4629 -1.0977 15 6 0.4725 -8.9780 -1.2742 16 6 1.8659 -9.6079 -1.0462 17 6 2.6527 -8.5613 -0.2358 18 1 -0.4850 0.8400 -0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6247 -2.5564 0.8919 21 1 2.8714 -3.6047 -0.8890 22 1 2.8726 -3.6039 0.8910 23 1 0.8541 -5.0447 0.8922 24 1 0.8534 -5.0451 -0.8877 25 1 3.1012 -6.0925 -0.8876 26 1 3.1013 -6.0919 0.8923 27 1 -0.1678 -6.9393 -0.8112 28 1 1.1623 -7.0382 -2.0103 29 1 0.1132 -9.1907 -2.2811 30 1 -0.2377 -9.3321 -0.5271 31 1 2.3573 -9.7948 -2.0010 32 1 1.7740 -10.5343 -0.4794 33 1 3.5213 -8.2282 -0.8038 34 1 2.9722 -8.9872 0.7153 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059639797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:51 Heat of formation + Delta-G solvation = -24.665030 kcal Electronic energy + Delta-G solvation = -12317.589042 eV Core-core repulsion = 10249.170090 eV Total energy + Delta-G solvation = -2068.418952 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.90760 -34.93027 -32.84099 -31.07800 -28.94933 -27.71939 -24.52393 -22.28392 -20.94788 -20.41045 -19.71601 -16.24424 -15.93444 -15.72662 -14.87536 -14.41583 -13.99031 -13.20442 -12.98668 -12.52569 -12.28612 -11.84756 -11.45641 -11.39777 -11.25134 -11.05774 -10.94053 -10.65544 -10.48477 -10.42916 -10.31616 -9.59042 -9.22800 -8.97664 -8.31566 -8.29283 -5.95503 -3.97669 3.34340 3.40316 3.44044 4.10678 4.49538 4.63611 4.68715 4.91151 5.28070 5.39806 5.41414 5.47054 5.54087 5.66281 5.71148 5.78295 5.93124 5.96815 6.03905 6.12009 6.18391 6.31998 6.53018 6.84764 6.99528 7.00957 7.12966 7.28495 7.73601 7.89685 8.05671 8.48652 9.09823 9.66081 11.15902 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.092741 B = 0.005394 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.842391 B = 5190.079813 C = 5382.019298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.117 4.117 12 C 0.047 3.953 13 N -0.520 5.520 14 C 0.033 3.967 15 C -0.125 4.125 16 C -0.131 4.131 17 C 0.033 3.967 18 H 0.260 0.740 19 H 0.014 0.986 20 H 0.016 0.984 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -16.430 -2.192 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.155 4.155 12 C -0.080 4.080 13 N -0.244 5.244 14 C -0.094 4.094 15 C -0.163 4.163 16 C -0.169 4.169 17 C -0.095 4.095 18 H 0.069 0.931 19 H 0.032 0.968 20 H 0.034 0.966 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.620 -16.347 -1.671 16.640 hybrid contribution 0.907 1.099 -0.799 1.633 sum 3.527 -15.249 -2.469 15.845 Atomic orbital electron populations 1.69967 1.06054 1.26503 1.51074 1.25031 0.94837 0.99213 0.95425 0.86610 0.79872 0.83566 0.78053 1.20713 1.21224 1.19894 1.21296 0.93019 0.91222 1.50286 0.92777 1.19092 0.94030 0.91351 0.97135 1.21599 0.99089 0.93973 1.00068 1.21722 0.97919 0.93858 1.02008 1.22422 0.96304 0.88860 1.00462 1.64826 1.13711 1.02795 1.43095 1.23243 0.97077 0.96092 0.93022 1.22500 0.96995 0.95291 1.01527 1.22392 0.96113 0.98582 0.99809 1.22868 0.94919 0.92138 0.99560 0.93060 0.96775 0.96588 0.93724 0.93410 0.91697 0.92538 0.95053 0.90892 0.89671 0.93700 0.91286 0.90842 0.91779 0.91250 0.94005 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 11 C -0.12 -2.11 4.87 -26.74 -0.13 -2.24 16 12 C 0.05 0.73 5.03 -3.83 -0.02 0.71 16 13 N -0.52 -7.33 5.40 -230.47 -1.24 -8.58 16 14 C 0.03 0.43 5.10 -1.90 -0.01 0.42 16 15 C -0.13 -1.29 7.06 -24.87 -0.18 -1.47 16 16 C -0.13 -1.27 6.93 -25.37 -0.18 -1.44 16 17 C 0.03 0.39 6.69 -2.76 -0.02 0.37 16 18 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 19 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 20 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 21 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.06 1.01 6.80 -51.93 -0.35 0.66 16 25 H 0.03 0.47 7.81 -51.93 -0.41 0.07 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.15 7.66 -51.93 -0.40 0.75 16 28 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.48 7.57 -51.93 -0.39 0.09 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -30.56 273.37 -8.78 -39.34 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -6.16 Total: -5.45 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.22 Total: -19.64 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.51 Total: -35.40 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.56 -8.78 -39.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059639797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.674 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds