Wall clock time and date at job start Mon Mar 30 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.48533 * 110.99670 * 52.60024 * 13 12 11 15 15 C 1.54936 * 103.22827 * 159.72645 * 14 13 12 16 16 C 1.54602 * 102.91755 * 322.58844 * 15 14 13 17 17 C 1.47895 * 111.00585 * 169.99973 * 13 12 11 18 18 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 20 20 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 21 21 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 22 22 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 23 23 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 24 24 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 25 25 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 26 26 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 27 27 H 1.09002 * 110.67270 * 278.16471 * 14 13 12 28 28 H 1.08998 * 110.66667 * 41.29259 * 14 13 12 29 29 H 1.09002 * 110.72666 * 204.23420 * 15 14 13 30 30 H 1.08998 * 110.72369 * 80.94172 * 15 14 13 31 31 H 1.09001 * 110.30688 * 263.03605 * 16 15 14 32 32 H 1.08996 * 110.30747 * 140.87557 * 16 15 14 33 33 H 1.08994 * 109.91810 * 333.51090 * 17 13 12 34 34 H 1.08999 * 109.91451 * 94.60787 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 7 1.7402 -7.4222 0.0035 14 6 0.7443 -7.4629 -1.0977 15 6 0.4725 -8.9780 -1.2742 16 6 1.8659 -9.6079 -1.0462 17 6 2.6527 -8.5613 -0.2358 18 1 -0.4850 0.8400 -0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6247 -2.5564 0.8919 21 1 2.8714 -3.6047 -0.8890 22 1 2.8726 -3.6039 0.8910 23 1 0.8541 -5.0447 0.8922 24 1 0.8534 -5.0451 -0.8877 25 1 3.1012 -6.0925 -0.8876 26 1 3.1013 -6.0919 0.8923 27 1 -0.1678 -6.9393 -0.8112 28 1 1.1623 -7.0382 -2.0103 29 1 0.1132 -9.1907 -2.2811 30 1 -0.2377 -9.3321 -0.5271 31 1 2.3573 -9.7948 -2.0010 32 1 1.7740 -10.5343 -0.4794 33 1 3.5213 -8.2282 -0.8038 34 1 2.9722 -8.9872 0.7153 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059639797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:51 Heat of formation + Delta-G solvation = -43.719892 kcal Electronic energy + Delta-G solvation = -12318.415323 eV Core-core repulsion = 10249.170090 eV Total energy + Delta-G solvation = -2069.245232 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.92964 -36.62141 -34.71136 -32.60330 -29.98252 -29.30885 -26.30028 -23.74160 -22.24190 -21.61014 -21.10393 -18.43257 -16.99800 -16.83850 -16.42696 -16.25882 -15.08968 -14.61314 -14.44760 -13.93975 -13.84207 -13.41797 -12.99610 -12.76348 -12.72767 -12.27752 -12.25901 -12.16310 -12.00752 -11.88513 -11.45303 -11.33536 -11.30963 -10.99283 -10.56233 -9.37449 -8.20483 -6.32342 1.39321 1.41256 1.52546 2.40657 3.05990 3.12216 3.73224 3.80137 4.05181 4.12800 4.23552 4.36236 4.50570 4.55901 4.65171 4.73496 4.83826 4.85447 4.93920 4.99076 5.07268 5.14511 5.23904 5.26101 5.31128 5.33801 5.52888 5.75193 5.84996 5.98218 6.10212 6.24792 6.84883 7.37136 8.91556 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.092741 B = 0.005394 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.842391 B = 5190.079813 C = 5382.019298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.057 3.943 13 N -0.535 5.535 14 C 0.027 3.973 15 C -0.120 4.120 16 C -0.126 4.126 17 C 0.029 3.971 18 H 0.264 0.736 19 H -0.011 1.011 20 H -0.011 1.011 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 -17.120 -2.489 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.071 4.071 13 N -0.259 5.259 14 C -0.101 4.101 15 C -0.158 4.158 16 C -0.164 4.164 17 C -0.099 4.099 18 H 0.073 0.927 19 H 0.007 0.993 20 H 0.008 0.992 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.917 -17.058 -1.969 17.613 hybrid contribution 0.459 1.294 -0.701 1.542 sum 4.376 -15.764 -2.671 16.576 Atomic orbital electron populations 1.70105 1.07896 1.27811 1.51696 1.26027 0.95794 1.03504 0.94640 0.85414 0.78650 0.78225 0.78559 1.19655 1.20626 1.18681 1.21739 0.93576 0.92487 1.50592 0.92170 1.19018 0.94488 0.93312 0.94587 1.21406 0.98000 0.93589 1.00480 1.21540 0.98040 0.93455 1.01352 1.22227 0.95425 0.88579 1.00875 1.64802 1.14422 1.02788 1.43903 1.23291 0.96283 0.98115 0.92427 1.22496 0.97639 0.93094 1.02583 1.22400 0.95205 0.98424 1.00347 1.22973 0.94811 0.91677 1.00401 0.92739 0.99282 0.99246 0.93158 0.92954 0.92761 0.92858 0.94582 0.90520 0.91007 0.94159 0.89672 0.90717 0.90549 0.89711 0.93778 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.38 13.29 21.45 0.28 -58.09 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -32.16 9.11 25.60 0.23 -31.93 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.15 5.15 30.59 0.16 -3.99 16 11 C -0.11 -3.84 4.87 30.59 0.15 -3.69 16 12 C 0.06 1.69 5.03 86.30 0.43 2.13 16 13 N -0.53 -14.44 5.40 -883.07 -4.76 -19.20 16 14 C 0.03 0.66 5.10 86.65 0.44 1.11 16 15 C -0.12 -2.23 7.06 31.80 0.22 -2.01 16 16 C -0.13 -2.09 6.93 31.47 0.22 -1.87 16 17 C 0.03 0.61 6.69 86.45 0.58 1.19 16 18 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 19 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 20 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 21 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.05 1.94 6.80 -2.39 -0.02 1.92 16 25 H 0.04 1.04 7.81 -2.39 -0.02 1.02 16 26 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.07 1.95 7.66 -2.39 -0.02 1.93 16 28 H 0.04 1.03 8.00 -2.39 -0.02 1.01 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 0.91 7.57 -2.39 -0.02 0.89 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -65.21 273.37 1.62 -63.60 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.02 Total: 3.90 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 3.05 Total: -37.30 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -4.48 Total: -77.30 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.21 1.62 -63.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059639797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.876 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds