Wall clock time and date at job start Mon Mar 30 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46708 * 2 1 4 4 C 1.53000 * 109.47251 * 120.00183 * 2 1 3 5 5 C 1.53000 * 109.46927 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47355 * 299.99860 * 5 4 2 7 7 N 1.46903 * 109.47236 * 300.00464 * 6 5 4 8 8 C 1.50694 * 109.47168 * 180.02562 * 6 5 4 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 6 5 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53000 * 109.46989 * 60.00178 * 6 5 4 17 17 C 1.53003 * 109.46990 * 240.00643 * 2 1 3 18 18 H 1.08995 * 109.47242 * 299.99697 * 1 2 3 19 19 H 1.08994 * 109.47288 * 59.99944 * 1 2 3 20 20 H 1.09000 * 109.46641 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46830 * 179.97438 * 3 2 1 22 22 H 1.08994 * 109.47292 * 300.00054 * 3 2 1 23 23 H 1.08997 * 109.47276 * 60.00647 * 3 2 1 24 24 H 1.08992 * 109.46855 * 60.00494 * 4 2 1 25 25 H 1.08995 * 109.47095 * 300.00209 * 4 2 1 26 26 H 1.09002 * 109.46807 * 180.02562 * 5 4 2 27 27 H 1.08998 * 109.47285 * 59.99754 * 5 4 2 28 28 H 1.00900 * 110.99966 * 179.97438 * 7 6 5 29 29 H 1.00900 * 110.99619 * 303.95007 * 7 6 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 31 31 H 1.09000 * 109.47156 * 59.99794 * 16 6 5 32 32 H 1.08997 * 109.47359 * 180.02562 * 16 6 5 33 33 H 1.09000 * 109.47195 * 299.99375 * 17 2 1 34 34 H 1.08994 * 109.47584 * 59.99594 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0806 -1.4415 0.0002 7 7 3.5914 -2.8267 -0.0002 8 6 5.5875 -1.4415 0.0008 9 1 6.1273 -0.9744 0.8113 10 6 6.2774 -2.0377 -1.0335 11 7 5.6202 -2.6069 -2.0203 12 14 8.1453 -2.0370 -1.0331 13 1 8.6409 -2.7368 -2.2456 14 1 8.6398 -0.6368 -1.0323 15 1 8.6403 -2.7375 0.1791 16 6 3.5705 -0.7202 -1.2490 17 6 2.0400 -0.7211 -1.2494 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 -0.0005 21 1 3.1300 1.4426 0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6768 -1.7489 1.2491 25 1 1.6767 -0.2075 2.1392 26 1 3.9334 -1.2350 2.1392 27 1 3.9330 0.3071 1.2497 28 1 3.9150 -3.3242 -0.8162 29 1 3.8609 -3.3055 0.8461 30 1 6.1055 -3.0260 -2.7481 31 1 3.9334 0.3076 -1.2487 32 1 3.9338 -1.2340 -2.1390 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:35 Heat of formation + Delta-G solvation = -30.587393 kcal Electronic energy + Delta-G solvation = -13707.299704 eV Core-core repulsion = 11638.623940 eV Total energy + Delta-G solvation = -2068.675765 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.70261 -34.53051 -31.48163 -29.58749 -28.47218 -26.69364 -26.04504 -23.37031 -21.55389 -19.26774 -17.02348 -16.36138 -14.83674 -14.28017 -14.13169 -13.52197 -13.31114 -13.06597 -12.17737 -11.92692 -11.90619 -11.26959 -11.10511 -11.05213 -10.92495 -10.72657 -10.64898 -10.28740 -9.99946 -9.92830 -9.63428 -9.28134 -9.12736 -8.62049 -8.39301 -6.95892 -5.94143 -4.13413 3.27000 3.32459 3.35451 4.38554 5.21598 5.47768 5.53441 5.59201 6.08171 6.10903 6.21454 6.31429 6.32322 6.39464 6.53057 6.58026 6.63405 6.74099 6.79424 6.85973 6.93156 6.99029 7.11179 7.30297 7.33399 7.63043 7.75998 7.91445 8.11722 8.34954 8.82590 9.12849 9.30465 9.59771 10.97687 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.058302 B = 0.011225 C = 0.011084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.144451 B = 2493.797754 C = 2525.534489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C -0.142 4.142 4 C -0.095 4.095 5 C -0.100 4.100 6 C 0.239 3.761 7 N -0.845 5.845 8 C -0.541 4.541 9 H 0.050 0.950 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.889 3.111 13 H -0.288 1.288 14 H -0.278 1.278 15 H -0.279 1.279 16 C -0.098 4.098 17 C -0.097 4.097 18 H 0.043 0.957 19 H 0.045 0.955 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.067 0.933 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.351 0.649 29 H 0.306 0.694 30 H 0.262 0.738 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 3.393 2.540 7.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 C -0.199 4.199 4 C -0.133 4.133 5 C -0.138 4.138 6 C 0.148 3.852 7 N -0.374 5.374 8 C -0.581 4.581 9 H 0.068 0.932 10 C -0.134 4.134 11 N -0.530 5.530 12 Si 0.717 3.283 13 H -0.213 1.213 14 H -0.204 1.204 15 H -0.205 1.205 16 C -0.136 4.136 17 C -0.135 4.135 18 H 0.062 0.938 19 H 0.064 0.936 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.167 0.833 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.715 3.630 2.314 7.976 hybrid contribution 2.202 -0.185 -0.006 2.210 sum -4.513 3.445 2.307 6.128 Atomic orbital electron populations 1.21862 0.96369 1.00994 1.00241 1.20478 0.93471 0.94963 0.97181 1.21959 1.02282 0.95923 0.99763 1.21446 0.96992 1.00047 0.94782 1.21582 0.93692 0.99486 0.99053 1.18208 0.90373 0.86600 0.90054 1.59441 1.65850 1.05063 1.07039 1.21970 0.93099 1.36216 1.06813 0.93214 1.24974 0.98130 0.95130 0.95163 1.69677 1.35016 1.37648 1.10664 0.86713 0.86171 0.78149 0.77231 1.21333 1.20392 1.20493 1.21520 0.91483 0.98575 1.02054 1.21538 0.98486 0.99529 0.93954 0.93790 0.93628 0.93045 0.91468 0.93882 0.94102 0.91439 0.94848 0.94237 0.93376 0.83301 0.88532 0.92755 0.94716 0.89585 0.91676 0.95094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.47 37.16 0.31 -1.78 16 2 C -0.06 -1.08 0.77 -154.51 -0.12 -1.20 16 3 C -0.14 -2.40 7.78 37.16 0.29 -2.12 16 4 C -0.10 -1.78 4.57 -26.73 -0.12 -1.90 16 5 C -0.10 -2.13 4.52 -26.73 -0.12 -2.25 16 6 C 0.24 5.71 0.52 -132.75 -0.07 5.64 16 7 N -0.84 -19.70 7.33 -0.19 0.00 -19.70 16 8 C -0.54 -14.45 8.20 -34.44 -0.28 -14.73 16 9 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 10 C 0.07 1.80 5.21 -17.82 -0.09 1.71 16 11 N -0.89 -24.01 9.54 55.43 0.53 -23.48 16 12 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 C -0.10 -2.30 4.39 -26.70 -0.12 -2.42 16 17 C -0.10 -1.97 4.58 -26.70 -0.12 -2.09 16 18 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 19 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.07 1.25 4.81 -51.93 -0.25 1.00 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.31 7.60 -51.93 -0.39 0.92 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 1.02 6.43 -51.93 -0.33 0.69 16 28 H 0.35 8.88 6.93 -39.29 -0.27 8.61 16 29 H 0.31 6.96 8.98 -39.29 -0.35 6.60 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 31 H 0.03 0.82 6.43 -51.93 -0.33 0.49 16 32 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 33 H 0.06 1.39 7.61 -51.93 -0.39 0.99 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 252.76 15.07 3.81 3.81 Total: -1.00 -25.95 252.76 -6.70 -32.64 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.57 Total: 11.89 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -0.44 Total: -21.15 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.53 Total: -43.18 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.95 -6.70 -32.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.054 kcal (2) G-P(sol) polarization free energy of solvation -25.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds