Wall clock time and date at job start Mon Mar 30 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47859 * 179.97438 * 4 3 2 6 6 C 1.47446 * 110.99564 * 69.87065 * 5 4 3 7 7 C 1.54322 * 107.23029 * 123.26484 * 6 5 4 8 8 C 1.55147 * 103.01738 * 22.28283 * 7 6 5 9 9 H 1.09001 * 110.99233 * 82.44044 * 8 7 6 10 10 C 1.50703 * 110.98924 * 206.21761 * 8 7 6 11 11 H 1.07995 * 119.99791 * 118.54351 * 10 8 7 12 12 C 1.37878 * 119.99977 * 298.55069 * 10 8 7 13 13 N 1.31509 * 119.99982 * 179.97438 * 12 10 8 14 14 Si 1.86797 * 119.99840 * 359.97438 * 12 10 8 15 15 H 1.48502 * 109.47344 * 90.00794 * 14 12 10 16 16 H 1.48505 * 109.46926 * 210.00247 * 14 12 10 17 17 H 1.48501 * 109.47737 * 330.00153 * 14 12 10 18 18 C 1.47839 * 111.00650 * 190.71730 * 5 4 3 19 19 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 27 27 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 28 28 H 1.09002 * 109.88561 * 242.66556 * 6 5 4 29 29 H 1.08996 * 109.89052 * 3.86024 * 6 5 4 30 30 H 1.08995 * 110.70417 * 140.66421 * 7 6 5 31 31 H 1.08994 * 110.70159 * 263.90210 * 7 6 5 32 32 H 0.97000 * 120.00079 * 179.97438 * 13 12 10 33 33 H 1.08993 * 110.37319 * 332.46787 * 18 5 4 34 34 H 1.09005 * 110.37071 * 94.80726 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8276 -0.0013 6 6 3.7897 3.4840 1.2911 7 6 5.1427 3.9801 1.8433 8 6 6.0239 4.0805 0.5704 9 1 5.8458 5.0188 0.0450 10 6 7.4837 3.9245 0.9108 11 1 8.0506 3.1050 0.4944 12 6 8.0953 4.8278 1.7539 13 7 9.3691 4.6914 2.0513 14 14 7.1147 6.2455 2.4736 15 1 6.5129 5.8260 3.7647 16 1 8.0146 7.4049 2.7005 17 1 6.0373 6.6328 1.5279 18 6 5.5147 2.8750 -0.2585 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.9336 0.9286 0.8891 27 1 3.9329 0.9289 -0.8909 28 1 3.1168 4.3288 1.1445 29 1 3.3459 2.7695 1.9844 30 1 5.0320 4.9572 2.3134 31 1 5.5603 3.2585 2.5453 32 1 9.7995 5.3272 2.6442 33 1 5.9900 1.9542 0.0793 34 1 5.7074 3.0355 -1.3194 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084428495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:51 Heat of formation + Delta-G solvation = -16.347048 kcal Electronic energy + Delta-G solvation = -12760.213804 eV Core-core repulsion = 10692.155547 eV Total energy + Delta-G solvation = -2068.058257 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.44915 -35.27289 -32.88290 -31.09478 -28.44754 -27.95261 -24.33898 -22.77155 -21.20271 -19.87748 -19.45165 -16.74810 -15.74033 -15.25763 -14.66568 -14.09127 -13.83781 -13.17389 -12.89973 -12.74170 -12.57084 -12.00037 -11.79669 -11.47442 -11.07225 -10.96245 -10.87258 -10.72800 -10.41645 -10.34545 -9.83012 -9.77908 -9.46881 -9.03590 -8.55453 -7.73458 -6.08159 -4.07587 3.28771 3.38241 3.41154 4.42055 4.48495 4.96168 5.06443 5.16029 5.24119 5.41240 5.53013 5.66302 5.74381 5.78889 5.83168 5.94810 5.98585 6.02195 6.10736 6.27807 6.30595 6.38724 6.43445 6.56727 6.76929 6.86161 7.01245 7.48142 7.51452 7.69395 7.82508 8.51365 8.94667 9.54731 11.05070 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.073269 B = 0.007604 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.062555 B = 3681.543679 C = 3891.830428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.051 3.949 5 N -0.537 5.537 6 C 0.045 3.955 7 C -0.151 4.151 8 C 0.011 3.989 9 H 0.039 0.961 10 C -0.511 4.511 11 H 0.074 0.926 12 C 0.072 3.928 13 N -0.902 5.902 14 Si 0.883 3.117 15 H -0.279 1.279 16 H -0.294 1.294 17 H -0.264 1.264 18 C 0.057 3.943 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.458 -5.789 -2.231 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.078 4.078 5 N -0.261 5.261 6 C -0.083 4.083 7 C -0.189 4.189 8 C -0.008 4.008 9 H 0.057 0.943 10 C -0.549 4.549 11 H 0.092 0.908 12 C -0.130 4.130 13 N -0.540 5.540 14 Si 0.712 3.288 15 H -0.205 1.205 16 H -0.221 1.221 17 H -0.189 1.189 18 C -0.070 4.070 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.570 -5.460 -2.531 15.764 hybrid contribution 0.034 0.327 1.213 1.257 sum -14.536 -5.133 -1.318 15.472 Atomic orbital electron populations 1.21757 0.96067 1.01201 1.01755 1.21508 0.95634 0.97272 1.01837 1.21606 0.95258 0.95928 1.02433 1.22241 0.94905 0.90282 1.00323 1.63610 1.16593 1.14888 1.30992 1.22789 0.98037 0.97989 0.89507 1.23219 0.94990 1.00062 1.00657 1.20255 0.95128 0.94324 0.91104 0.94274 1.20931 0.92263 1.13072 1.28673 0.90816 1.24974 0.94680 0.97379 0.95925 1.69900 1.10515 1.37143 1.36455 0.86881 0.79854 0.82201 0.79894 1.20479 1.22128 1.18878 1.22984 0.84714 0.99355 0.99946 0.93066 0.92893 0.92780 0.92285 0.92098 0.91442 0.92238 0.95124 0.91437 0.91793 0.93859 0.92911 0.91534 0.92652 0.93923 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.32 5.93 -26.73 -0.16 -1.48 16 3 C -0.11 -1.46 5.24 -26.74 -0.14 -1.60 16 4 C 0.05 0.78 4.54 -3.83 -0.02 0.77 16 5 N -0.54 -9.91 5.16 -231.26 -1.19 -11.10 16 6 C 0.04 0.82 6.21 -2.83 -0.02 0.81 16 7 C -0.15 -3.30 5.09 -24.90 -0.13 -3.43 16 8 C 0.01 0.27 2.40 -89.63 -0.22 0.06 16 9 H 0.04 0.98 7.41 -51.93 -0.39 0.59 16 10 C -0.51 -14.48 9.13 -34.44 -0.31 -14.79 16 11 H 0.07 2.25 8.03 -52.49 -0.42 1.83 16 12 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 13 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 14 Si 0.88 22.02 24.52 -169.99 -4.17 17.85 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 17 H -0.26 -6.36 6.48 56.52 0.37 -5.99 16 18 C 0.06 1.19 6.13 -2.30 -0.01 1.18 16 19 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.78 7.15 -51.93 -0.37 0.40 16 26 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 27 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.72 6.91 -51.93 -0.36 0.37 16 30 H 0.05 1.16 5.12 -51.93 -0.27 0.89 16 31 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.04 0.91 7.70 -51.93 -0.40 0.51 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 264.21 15.07 3.98 3.98 Total: -1.00 -29.53 264.21 -7.34 -36.87 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.00 Total: -3.12 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -0.73 Total: -17.51 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.42 Total: -38.08 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.17 Total: 17.85 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.53 -7.34 -36.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084428495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.527 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds