Wall clock time and date at job start Mon Mar 30 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47859 * 179.97438 * 4 3 2 6 6 C 1.47446 * 110.99564 * 69.87065 * 5 4 3 7 7 C 1.54322 * 107.23029 * 123.26484 * 6 5 4 8 8 C 1.55147 * 103.01738 * 22.28283 * 7 6 5 9 9 H 1.09001 * 110.99233 * 82.44044 * 8 7 6 10 10 C 1.50703 * 110.98924 * 206.21761 * 8 7 6 11 11 H 1.07995 * 119.99791 * 118.54351 * 10 8 7 12 12 C 1.37878 * 119.99977 * 298.55069 * 10 8 7 13 13 N 1.31509 * 119.99982 * 179.97438 * 12 10 8 14 14 Si 1.86797 * 119.99840 * 359.97438 * 12 10 8 15 15 H 1.48502 * 109.47344 * 90.00794 * 14 12 10 16 16 H 1.48505 * 109.46926 * 210.00247 * 14 12 10 17 17 H 1.48501 * 109.47737 * 330.00153 * 14 12 10 18 18 C 1.47839 * 111.00650 * 190.71730 * 5 4 3 19 19 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 27 27 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 28 28 H 1.09002 * 109.88561 * 242.66556 * 6 5 4 29 29 H 1.08996 * 109.89052 * 3.86024 * 6 5 4 30 30 H 1.08995 * 110.70417 * 140.66421 * 7 6 5 31 31 H 1.08994 * 110.70159 * 263.90210 * 7 6 5 32 32 H 0.97000 * 120.00079 * 179.97438 * 13 12 10 33 33 H 1.08993 * 110.37319 * 332.46787 * 18 5 4 34 34 H 1.09005 * 110.37071 * 94.80726 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8276 -0.0013 6 6 3.7897 3.4840 1.2911 7 6 5.1427 3.9801 1.8433 8 6 6.0239 4.0805 0.5704 9 1 5.8458 5.0188 0.0450 10 6 7.4837 3.9245 0.9108 11 1 8.0506 3.1050 0.4944 12 6 8.0953 4.8278 1.7539 13 7 9.3691 4.6914 2.0513 14 14 7.1147 6.2455 2.4736 15 1 6.5129 5.8260 3.7647 16 1 8.0146 7.4049 2.7005 17 1 6.0373 6.6328 1.5279 18 6 5.5147 2.8750 -0.2585 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.9336 0.9286 0.8891 27 1 3.9329 0.9289 -0.8909 28 1 3.1168 4.3288 1.1445 29 1 3.3459 2.7695 1.9844 30 1 5.0320 4.9572 2.3134 31 1 5.5603 3.2585 2.5453 32 1 9.7995 5.3272 2.6442 33 1 5.9900 1.9542 0.0793 34 1 5.7074 3.0355 -1.3194 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084428495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:50 Heat of formation + Delta-G solvation = -35.834853 kcal Electronic energy + Delta-G solvation = -12761.058859 eV Core-core repulsion = 10692.155547 eV Total energy + Delta-G solvation = -2068.903311 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99820 -36.43783 -34.78710 -32.72632 -30.14420 -29.22827 -26.15417 -24.08982 -22.27933 -21.42103 -21.15385 -18.82527 -17.13082 -16.87823 -16.00719 -15.74971 -15.14336 -14.76756 -14.36242 -14.28321 -13.98904 -13.23321 -13.14768 -13.01479 -12.68986 -12.63199 -12.06497 -11.94629 -11.86095 -11.60412 -11.46312 -11.38093 -11.29624 -11.11618 -10.74718 -9.22476 -8.32656 -6.37297 1.30851 1.35329 1.46121 2.32166 3.01941 3.11563 3.89321 3.94228 4.10867 4.16343 4.31343 4.35306 4.47860 4.55307 4.68465 4.73998 4.78623 4.85514 4.97996 4.99752 5.01538 5.12438 5.15676 5.28455 5.31516 5.43867 5.51823 5.55145 5.64524 6.02396 6.24549 6.31628 6.68394 7.28890 8.84177 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.073269 B = 0.007604 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.062555 B = 3681.543679 C = 3891.830428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.106 4.106 4 C 0.048 3.952 5 N -0.537 5.537 6 C 0.051 3.949 7 C -0.149 4.149 8 C 0.004 3.996 9 H 0.035 0.965 10 C -0.518 4.518 11 H 0.033 0.967 12 C 0.015 3.985 13 N -0.950 5.950 14 Si 0.946 3.054 15 H -0.264 1.264 16 H -0.293 1.293 17 H -0.246 1.246 18 C 0.065 3.935 19 H 0.061 0.939 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.267 0.733 33 H 0.030 0.970 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.203 -5.525 -2.039 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.144 4.144 4 C -0.080 4.080 5 N -0.261 5.261 6 C -0.077 4.077 7 C -0.188 4.188 8 C -0.015 4.015 9 H 0.053 0.947 10 C -0.557 4.557 11 H 0.051 0.949 12 C -0.182 4.182 13 N -0.590 5.590 14 Si 0.771 3.229 15 H -0.190 1.190 16 H -0.220 1.220 17 H -0.170 1.170 18 C -0.062 4.062 19 H 0.080 0.920 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.341 -5.213 -2.349 18.260 hybrid contribution 0.955 0.155 1.097 1.463 sum -16.386 -5.059 -1.252 17.195 Atomic orbital electron populations 1.21739 0.94829 1.02056 1.01972 1.21487 0.96673 0.95757 1.02084 1.21539 0.92942 0.97442 1.02434 1.22374 0.96787 0.88434 1.00379 1.63653 1.14336 1.16936 1.31137 1.22798 0.96187 0.99081 0.89602 1.23110 0.96405 1.00094 0.99177 1.20191 0.92880 0.95410 0.93039 0.94674 1.21198 0.94559 1.11749 1.28155 0.94871 1.25852 0.95596 1.00338 0.96409 1.70045 1.12529 1.38679 1.37762 0.85857 0.78732 0.78451 0.79823 1.18955 1.22038 1.17024 1.22794 0.86437 0.97399 0.99615 0.91955 0.92766 0.92495 0.92274 0.91707 0.91438 0.92178 0.95578 0.90972 0.90053 0.91806 0.92554 0.92994 0.92445 0.95189 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -2.24 5.93 30.59 0.18 -2.06 16 3 C -0.11 -2.39 5.24 30.59 0.16 -2.23 16 4 C 0.05 1.38 4.54 86.30 0.39 1.77 16 5 N -0.54 -18.62 5.16 -885.57 -4.57 -23.19 16 6 C 0.05 1.73 6.21 86.65 0.54 2.26 16 7 C -0.15 -6.26 5.09 31.78 0.16 -6.10 16 8 C 0.00 0.20 2.40 -10.15 -0.02 0.18 16 9 H 0.04 1.71 7.41 -2.39 -0.02 1.69 16 10 C -0.52 -30.09 9.13 25.60 0.23 -29.85 16 11 H 0.03 2.12 8.03 -2.91 -0.02 2.10 16 12 C 0.02 0.90 5.46 84.66 0.46 1.36 16 13 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 14 Si 0.95 44.98 24.52 68.60 1.68 46.66 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 17 H -0.25 -10.94 6.48 99.48 0.64 -10.30 16 18 C 0.07 2.68 6.13 86.77 0.53 3.22 16 19 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 20 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 21 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.36 7.15 -2.39 -0.02 1.34 16 26 H 0.03 0.77 7.96 -2.39 -0.02 0.75 16 27 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 28 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.06 1.91 6.91 -2.39 -0.02 1.90 16 30 H 0.06 2.31 5.12 -2.39 -0.01 2.29 16 31 H 0.05 2.30 8.03 -2.39 -0.02 2.28 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.03 1.29 7.70 -2.39 -0.02 1.27 16 34 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -63.58 264.21 1.73 -61.84 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.97 Total: 7.39 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 3.35 Total: -33.04 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -4.27 Total: -82.86 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.68 Total: 46.66 kcal Total: -63.58 1.73 -61.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084428495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.010 kcal (2) G-P(sol) polarization free energy of solvation -63.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds