Wall clock time and date at job start Mon Mar 30 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47241 * 2 1 4 4 C 1.53005 * 109.46860 * 119.99647 * 2 1 3 5 5 N 1.46900 * 109.47005 * 175.00070 * 4 2 1 6 6 C 1.48539 * 110.99796 * 287.39483 * 5 4 2 7 7 C 1.54932 * 103.22489 * 200.27757 * 6 5 4 8 8 C 1.54598 * 102.92273 * 37.41993 * 7 6 5 9 9 H 1.09002 * 110.31174 * 96.95391 * 8 7 6 10 10 C 1.50702 * 110.39117 * 219.08242 * 8 7 6 11 11 H 1.07995 * 120.00230 * 117.15313 * 10 8 7 12 12 C 1.37876 * 119.99779 * 297.14557 * 10 8 7 13 13 N 1.31518 * 119.99979 * 179.97438 * 12 10 8 14 14 Si 1.86805 * 120.00197 * 0.02562 * 12 10 8 15 15 H 1.48498 * 109.47079 * 89.99647 * 14 12 10 16 16 H 1.48496 * 109.46971 * 209.99520 * 14 12 10 17 17 H 1.48503 * 109.46709 * 329.99228 * 14 12 10 18 18 C 1.47897 * 110.99752 * 170.00361 * 5 4 2 19 19 H 1.09006 * 109.47233 * 300.00334 * 1 2 3 20 20 H 1.09003 * 109.47149 * 60.00209 * 1 2 3 21 21 H 1.08999 * 109.47591 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47218 * 239.99570 * 2 1 3 23 23 H 1.09003 * 109.46878 * 299.99957 * 3 2 1 24 24 H 1.09006 * 109.47280 * 59.99694 * 3 2 1 25 25 H 1.08997 * 109.47500 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46683 * 55.00031 * 4 2 1 27 27 H 1.08997 * 109.47079 * 295.00410 * 4 2 1 28 28 H 1.08999 * 110.66816 * 318.71519 * 6 5 4 29 29 H 1.09005 * 110.66488 * 81.84813 * 6 5 4 30 30 H 1.08994 * 110.72994 * 279.05876 * 7 6 5 31 31 H 1.09002 * 110.72359 * 155.77140 * 7 6 5 32 32 H 0.96998 * 120.00358 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.92227 * 26.48731 * 18 5 4 34 34 H 1.08999 * 109.91658 * 265.19118 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 3.9252 -1.8290 0.1786 7 6 5.3697 -2.1843 0.6115 8 6 5.2813 -2.1705 2.1549 9 1 5.1388 -3.1822 2.5348 10 6 6.5261 -1.5610 2.7468 11 1 6.4597 -0.6507 3.3240 12 6 7.7497 -2.1657 2.5513 13 7 8.8360 -1.6335 3.0674 14 14 7.8647 -3.7400 1.5523 15 1 8.0811 -3.4040 0.1222 16 1 9.0016 -4.5576 2.0462 17 1 6.6027 -4.5098 1.6947 18 6 4.0534 -1.2997 2.4796 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.6766 1.9562 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6052 -1.7197 1.2952 27 1 1.7515 -0.1583 2.1370 28 1 3.2839 -2.7094 0.2190 29 1 3.9193 -1.3929 -0.8204 30 1 6.0745 -1.4314 0.2589 31 1 5.6483 -3.1742 0.2501 32 1 9.6969 -2.0587 2.9296 33 1 3.3062 -1.8931 3.0064 34 1 4.3532 -0.4482 3.0904 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084428500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:53 Heat of formation + Delta-G solvation = -11.671615 kcal Electronic energy + Delta-G solvation = -13008.828922 eV Core-core repulsion = 10940.973407 eV Total energy + Delta-G solvation = -2067.855515 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.52356 -35.48948 -32.64102 -30.48033 -28.40900 -26.95919 -25.57725 -23.41672 -20.99882 -19.54646 -19.17634 -16.87616 -15.60626 -14.96761 -14.49960 -14.16281 -13.45120 -13.21963 -12.79828 -12.58276 -12.31976 -12.09880 -11.65627 -11.40777 -11.20605 -10.84711 -10.77352 -10.64359 -10.31835 -10.25561 -9.93466 -9.85536 -9.40309 -8.97694 -8.52287 -7.77333 -6.02956 -4.00755 3.31044 3.39241 3.40337 4.45089 4.53420 4.98222 5.11789 5.26996 5.34341 5.60133 5.61482 5.76257 5.79304 5.82676 5.92558 6.00304 6.04771 6.07849 6.20558 6.24974 6.29304 6.50216 6.62243 6.65650 6.74955 6.89808 7.16094 7.21919 7.69532 7.73607 7.82497 8.57432 9.01330 9.59544 11.10385 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.064578 B = 0.008720 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.482060 B = 3210.196315 C = 3356.934443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.137 4.137 4 C 0.051 3.949 5 N -0.513 5.513 6 C 0.038 3.962 7 C -0.130 4.130 8 C 0.005 3.995 9 H 0.029 0.971 10 C -0.502 4.502 11 H 0.075 0.925 12 C 0.069 3.931 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.294 1.294 17 H -0.267 1.267 18 C 0.055 3.945 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.022 0.978 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 0.698 -6.248 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.194 4.194 4 C -0.078 4.078 5 N -0.237 5.237 6 C -0.090 4.090 7 C -0.169 4.169 8 C -0.015 4.015 9 H 0.047 0.953 10 C -0.540 4.540 11 H 0.093 0.907 12 C -0.132 4.132 13 N -0.541 5.541 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.221 1.221 17 H -0.192 1.192 18 C -0.072 4.072 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.147 1.205 -6.339 14.645 hybrid contribution -0.155 -1.704 -0.333 1.743 sum -13.302 -0.498 -6.672 14.890 Atomic orbital electron populations 1.21829 0.95800 1.01229 1.01499 1.21073 0.94406 0.97299 0.98271 1.21706 1.02743 0.94774 1.00213 1.22323 0.89259 0.98239 0.97971 1.64708 1.08001 1.44798 1.06146 1.23207 0.96992 0.92810 0.96018 1.22962 0.94839 0.99765 0.99290 1.19992 0.94573 0.95373 0.91539 0.95287 1.21054 0.89444 1.10789 1.32742 0.90678 1.24993 0.95761 0.96989 0.95449 1.69904 0.98568 1.40065 1.45601 0.86914 0.77327 0.84202 0.80714 1.20281 1.22080 1.19231 1.22891 0.95657 0.98580 0.90106 0.92825 0.92850 0.93156 0.91493 0.93941 0.93348 0.91041 0.95482 0.91371 0.95107 0.91384 0.90425 0.93515 0.92758 0.95966 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.19 37.16 0.34 -1.20 16 2 C -0.09 -1.19 2.95 -90.62 -0.27 -1.46 16 3 C -0.14 -1.79 9.08 37.15 0.34 -1.45 16 4 C 0.05 0.77 4.09 -3.82 -0.02 0.75 16 5 N -0.51 -9.51 4.70 -230.45 -1.08 -10.59 16 6 C 0.04 0.69 5.90 -1.90 -0.01 0.67 16 7 C -0.13 -2.84 4.84 -24.87 -0.12 -2.96 16 8 C 0.00 0.11 2.43 -90.41 -0.22 -0.11 16 9 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 10 C -0.50 -14.24 8.98 -34.44 -0.31 -14.55 16 11 H 0.08 2.31 7.59 -52.49 -0.40 1.91 16 12 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 13 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 14 Si 0.88 21.94 24.79 -169.99 -4.21 17.72 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.27 -6.40 6.38 56.52 0.36 -6.04 16 18 C 0.05 1.14 6.31 -2.75 -0.02 1.12 16 19 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.90 7.18 -51.93 -0.37 0.53 16 23 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.08 7.75 -51.93 -0.40 0.68 16 26 H 0.03 0.40 7.83 -51.93 -0.41 0.00 16 27 H 0.07 1.00 8.08 -51.93 -0.42 0.59 16 28 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 29 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 30 H 0.08 1.82 7.86 -51.93 -0.41 1.41 16 31 H 0.05 0.99 6.06 -51.93 -0.31 0.68 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.02 0.42 7.77 -51.93 -0.40 0.02 16 34 H 0.08 1.72 7.39 -51.93 -0.38 1.33 16 LS Contribution 262.49 15.07 3.96 3.96 Total: -1.00 -29.51 262.49 -6.92 -36.43 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.98 Total: -3.15 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -0.38 Total: -17.26 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.31 Total: -37.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.21 Total: 17.72 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.51 -6.92 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084428500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.759 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds