Wall clock time and date at job start Mon Mar 30 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47241 * 2 1 4 4 C 1.53005 * 109.46860 * 119.99647 * 2 1 3 5 5 N 1.46900 * 109.47005 * 175.00070 * 4 2 1 6 6 C 1.48539 * 110.99796 * 287.39483 * 5 4 2 7 7 C 1.54932 * 103.22489 * 200.27757 * 6 5 4 8 8 C 1.54598 * 102.92273 * 37.41993 * 7 6 5 9 9 H 1.09002 * 110.31174 * 96.95391 * 8 7 6 10 10 C 1.50702 * 110.39117 * 219.08242 * 8 7 6 11 11 H 1.07995 * 120.00230 * 117.15313 * 10 8 7 12 12 C 1.37876 * 119.99779 * 297.14557 * 10 8 7 13 13 N 1.31518 * 119.99979 * 179.97438 * 12 10 8 14 14 Si 1.86805 * 120.00197 * 0.02562 * 12 10 8 15 15 H 1.48498 * 109.47079 * 89.99647 * 14 12 10 16 16 H 1.48496 * 109.46971 * 209.99520 * 14 12 10 17 17 H 1.48503 * 109.46709 * 329.99228 * 14 12 10 18 18 C 1.47897 * 110.99752 * 170.00361 * 5 4 2 19 19 H 1.09006 * 109.47233 * 300.00334 * 1 2 3 20 20 H 1.09003 * 109.47149 * 60.00209 * 1 2 3 21 21 H 1.08999 * 109.47591 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47218 * 239.99570 * 2 1 3 23 23 H 1.09003 * 109.46878 * 299.99957 * 3 2 1 24 24 H 1.09006 * 109.47280 * 59.99694 * 3 2 1 25 25 H 1.08997 * 109.47500 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46683 * 55.00031 * 4 2 1 27 27 H 1.08997 * 109.47079 * 295.00410 * 4 2 1 28 28 H 1.08999 * 110.66816 * 318.71519 * 6 5 4 29 29 H 1.09005 * 110.66488 * 81.84813 * 6 5 4 30 30 H 1.08994 * 110.72994 * 279.05876 * 7 6 5 31 31 H 1.09002 * 110.72359 * 155.77140 * 7 6 5 32 32 H 0.96998 * 120.00358 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.92227 * 26.48731 * 18 5 4 34 34 H 1.08999 * 109.91658 * 265.19118 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 3.9252 -1.8290 0.1786 7 6 5.3697 -2.1843 0.6115 8 6 5.2813 -2.1705 2.1549 9 1 5.1388 -3.1822 2.5348 10 6 6.5261 -1.5610 2.7468 11 1 6.4597 -0.6507 3.3240 12 6 7.7497 -2.1657 2.5513 13 7 8.8360 -1.6335 3.0674 14 14 7.8647 -3.7400 1.5523 15 1 8.0811 -3.4040 0.1222 16 1 9.0016 -4.5576 2.0462 17 1 6.6027 -4.5098 1.6947 18 6 4.0534 -1.2997 2.4796 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.6766 1.9562 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6052 -1.7197 1.2952 27 1 1.7515 -0.1583 2.1370 28 1 3.2839 -2.7094 0.2190 29 1 3.9193 -1.3929 -0.8204 30 1 6.0745 -1.4314 0.2589 31 1 5.6483 -3.1742 0.2501 32 1 9.6969 -2.0587 2.9296 33 1 3.3062 -1.8931 3.0064 34 1 4.3532 -0.4482 3.0904 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084428500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:53 Heat of formation + Delta-G solvation = -31.200522 kcal Electronic energy + Delta-G solvation = -13009.675759 eV Core-core repulsion = 10940.973407 eV Total energy + Delta-G solvation = -2068.702352 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.02345 -36.76859 -34.64944 -32.18330 -30.08699 -27.88676 -27.17816 -25.15238 -22.43204 -21.18078 -20.53885 -18.98949 -17.08895 -16.50535 -15.93475 -15.79544 -14.92311 -14.61952 -14.50458 -14.02475 -13.85411 -13.13570 -13.13539 -12.90924 -12.68743 -12.49417 -12.30450 -11.91505 -11.71526 -11.69486 -11.55619 -11.40020 -11.20213 -11.04088 -10.72673 -9.20246 -8.27938 -6.30991 1.33386 1.35845 1.45967 2.34929 3.05078 3.17689 3.86607 4.00236 4.09968 4.24705 4.30900 4.42832 4.45561 4.66033 4.74220 4.76158 4.85607 4.90343 4.91811 5.02409 5.10998 5.15435 5.20782 5.30838 5.35809 5.45509 5.53628 5.59064 5.71668 6.12168 6.27042 6.37821 6.74250 7.33060 8.89152 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.064578 B = 0.008720 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.482060 B = 3210.196315 C = 3356.934443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.135 4.135 4 C 0.050 3.950 5 N -0.526 5.526 6 C 0.048 3.952 7 C -0.130 4.130 8 C -0.001 4.001 9 H 0.030 0.970 10 C -0.509 4.509 11 H 0.030 0.970 12 C 0.009 3.991 13 N -0.953 5.953 14 Si 0.946 3.054 15 H -0.264 1.264 16 H -0.294 1.294 17 H -0.245 1.245 18 C 0.062 3.938 19 H 0.056 0.944 20 H 0.066 0.934 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.265 0.735 33 H 0.041 0.959 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.793 -0.645 -8.048 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.192 4.192 4 C -0.078 4.078 5 N -0.250 5.250 6 C -0.080 4.080 7 C -0.168 4.168 8 C -0.021 4.021 9 H 0.048 0.952 10 C -0.547 4.547 11 H 0.048 0.952 12 C -0.187 4.187 13 N -0.594 5.594 14 Si 0.770 3.230 15 H -0.189 1.189 16 H -0.221 1.221 17 H -0.169 1.169 18 C -0.066 4.066 19 H 0.075 0.925 20 H 0.085 0.915 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.440 -0.130 -8.146 17.457 hybrid contribution 0.536 -1.177 0.298 1.327 sum -14.904 -1.307 -7.848 16.894 Atomic orbital electron populations 1.21776 0.93598 1.02031 1.02378 1.21065 0.96143 0.96552 0.96948 1.21675 1.00948 0.95448 1.01172 1.22433 0.86875 0.99170 0.99321 1.64666 1.10507 1.44978 1.04833 1.23169 0.94605 0.93626 0.96593 1.22822 0.97018 0.99692 0.97278 1.19972 0.93614 0.95406 0.93062 0.95152 1.21325 0.91829 1.09416 1.32141 0.95175 1.25902 0.95164 1.00886 0.96750 1.70063 0.99354 1.42242 1.47703 0.85849 0.78110 0.79630 0.79365 1.18870 1.22072 1.16910 1.22654 0.95132 0.97373 0.91414 0.92460 0.91534 0.92405 0.91524 0.92201 0.93243 0.93738 0.94433 0.91323 0.93035 0.89445 0.92846 0.92423 0.92627 0.94042 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.19 71.98 0.66 -1.78 16 2 C -0.09 -2.02 2.95 -10.79 -0.03 -2.05 16 3 C -0.14 -3.26 9.08 71.98 0.65 -2.60 16 4 C 0.05 1.38 4.09 86.31 0.35 1.73 16 5 N -0.53 -18.59 4.70 -883.01 -4.15 -22.74 16 6 C 0.05 1.59 5.90 86.65 0.51 2.10 16 7 C -0.13 -5.43 4.84 31.80 0.15 -5.27 16 8 C 0.00 -0.06 2.43 -10.66 -0.03 -0.08 16 9 H 0.03 1.43 7.18 -2.39 -0.02 1.41 16 10 C -0.51 -29.78 8.98 25.60 0.23 -29.55 16 11 H 0.03 1.97 7.59 -2.91 -0.02 1.94 16 12 C 0.01 0.56 5.46 84.65 0.46 1.02 16 13 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 14 Si 0.95 44.92 24.79 68.60 1.70 46.62 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 17 H -0.25 -10.71 6.38 99.48 0.64 -10.07 16 18 C 0.06 2.55 6.31 86.45 0.55 3.09 16 19 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 20 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 1.55 7.18 -2.39 -0.02 1.53 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.04 1.30 7.75 -2.39 -0.02 1.29 16 26 H 0.04 0.97 7.83 -2.39 -0.02 0.95 16 27 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 28 H 0.05 1.54 7.81 -2.39 -0.02 1.52 16 29 H 0.09 2.61 7.68 -2.38 -0.02 2.60 16 30 H 0.05 2.47 7.86 -2.39 -0.02 2.45 16 31 H 0.06 2.26 6.06 -2.39 -0.01 2.25 16 32 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.04 1.52 7.77 -2.39 -0.02 1.50 16 34 H 0.05 2.41 7.39 -2.39 -0.02 2.40 16 Total: -1.00 -64.88 262.49 2.33 -62.55 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.96 Total: 7.46 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.51 Total: -33.39 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -3.85 Total: -83.24 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.70 Total: 46.62 kcal Total: -64.88 2.33 -62.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084428500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.351 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds