Wall clock time and date at job start Mon Mar 30 2020 01:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 115.55051 * 2 1 4 4 C 1.53000 * 117.50009 * 145.67028 * 2 1 3 5 5 C 1.53004 * 117.50266 * 214.97811 * 4 2 1 6 6 N 1.46498 * 109.46702 * 71.53210 * 5 4 2 7 7 C 1.36943 * 120.00097 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99280 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00174 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00181 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99950 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47190 * 90.00037 * 11 9 7 13 13 H 1.48498 * 109.46866 * 209.99869 * 11 9 7 14 14 H 1.48499 * 109.46985 * 329.99927 * 11 9 7 15 15 C 1.53001 * 60.03450 * 107.47798 * 4 2 1 16 16 C 1.53003 * 117.49814 * 107.49906 * 15 4 2 17 17 C 1.52997 * 117.50208 * 252.52610 * 15 4 2 18 18 H 1.08993 * 109.47378 * 325.71712 * 1 2 3 19 19 H 1.09002 * 109.47130 * 85.72424 * 1 2 3 20 20 H 1.08998 * 109.47167 * 205.71619 * 1 2 3 21 21 H 1.09004 * 109.47317 * 154.27660 * 3 2 1 22 22 H 1.09001 * 109.47368 * 274.27785 * 3 2 1 23 23 H 1.08997 * 109.47137 * 34.27994 * 3 2 1 24 24 H 1.08999 * 117.50061 * 359.97438 * 4 2 1 25 25 H 1.08995 * 109.46896 * 311.53631 * 5 4 2 26 26 H 1.08992 * 109.47411 * 191.52961 * 5 4 2 27 27 H 0.97003 * 120.00054 * 0.02562 * 6 5 4 28 28 H 0.96998 * 120.00250 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47243 * 172.94799 * 16 15 4 30 30 H 1.09004 * 109.47196 * 292.94719 * 16 15 4 31 31 H 1.09002 * 109.47176 * 52.94544 * 16 15 4 32 32 H 1.09004 * 109.46852 * 8.60290 * 17 15 4 33 33 H 1.09002 * 109.47596 * 128.60484 * 17 15 4 34 34 H 1.09002 * 109.46952 * 248.60733 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 3.5490 -0.7755 1.4717 6 7 3.2694 0.0664 2.6375 7 6 4.2978 0.5032 3.4292 8 1 5.3150 0.2267 3.1943 9 6 4.0329 1.3014 4.5336 10 7 5.0213 1.7208 5.2948 11 14 2.2733 1.7790 4.9403 12 1 1.6805 0.7613 5.8447 13 1 2.2625 3.1038 5.6112 14 1 1.4782 1.8517 3.6882 15 6 2.2367 -1.1221 -0.7647 16 6 3.5495 -0.7781 -1.4712 17 6 1.3588 -2.1576 -1.4703 18 1 -0.3634 0.8491 0.5788 19 1 -0.3633 0.0766 -1.0248 20 1 -0.3633 -0.9259 0.4459 21 1 3.1819 1.3089 0.4460 22 1 2.2774 1.7413 -1.0248 23 1 1.5805 2.0744 0.5788 24 1 1.6113 -1.8578 1.2693 25 1 4.2014 -0.2381 0.7836 26 1 4.0396 -1.6933 1.7956 27 1 2.3557 0.3144 2.8487 28 1 4.8362 2.2788 6.0663 29 1 3.4380 -0.9388 -2.5435 30 1 3.7997 0.2663 -1.2845 31 1 4.3460 -1.4164 -1.0890 32 1 0.7295 -2.6610 -0.7364 33 1 0.7296 -1.6588 -2.2075 34 1 1.9921 -2.8909 -1.9698 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086240081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:08 Heat of formation + Delta-G solvation = 2.799938 kcal Electronic energy + Delta-G solvation = -13137.732562 eV Core-core repulsion = 11070.504580 eV Total energy + Delta-G solvation = -2067.227981 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68740 -36.33163 -33.42940 -31.97980 -29.94716 -29.31346 -27.04658 -26.43656 -23.82922 -20.68921 -19.25753 -18.55861 -16.63515 -16.33304 -15.95207 -15.46441 -15.06495 -14.55408 -14.35678 -13.69587 -13.44213 -13.34967 -13.20327 -13.01016 -12.86397 -12.80566 -12.62709 -12.59409 -12.21883 -11.86169 -11.69519 -11.57954 -11.02137 -10.34216 -10.09650 -9.26140 -8.03302 -5.35143 1.36103 1.38882 1.47009 2.47588 2.68541 3.27947 3.59602 3.73614 3.83366 4.12815 4.26660 4.30217 4.53130 4.64284 4.73385 4.80487 4.84059 4.96146 4.99556 5.04207 5.09957 5.14994 5.17397 5.20489 5.23456 5.31658 5.47258 5.53627 5.65576 5.74896 6.21389 7.08214 7.85722 8.06872 9.18615 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045796 B = 0.010495 C = 0.009497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.259377 B = 2667.365268 C = 2947.480717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.118 4.118 3 C -0.118 4.118 4 C -0.164 4.164 5 C 0.183 3.817 6 N -0.750 5.750 7 C -0.231 4.231 8 H 0.054 0.946 9 C -0.064 4.064 10 N -0.985 5.985 11 Si 0.954 3.046 12 H -0.279 1.279 13 H -0.295 1.295 14 H -0.252 1.252 15 C -0.100 4.100 16 C -0.121 4.121 17 C -0.107 4.107 18 H 0.051 0.949 19 H 0.075 0.925 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.102 0.898 25 H 0.031 0.969 26 H 0.017 0.983 27 H 0.365 0.635 28 H 0.258 0.742 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -5.526 -15.328 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.175 4.175 4 C -0.182 4.182 5 C 0.057 3.943 6 N -0.395 5.395 7 C -0.362 4.362 8 H 0.072 0.928 9 C -0.255 4.255 10 N -0.636 5.636 11 Si 0.781 3.219 12 H -0.206 1.206 13 H -0.221 1.221 14 H -0.176 1.176 15 C -0.100 4.100 16 C -0.178 4.178 17 C -0.164 4.164 18 H 0.070 0.930 19 H 0.094 0.906 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.199 0.801 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.648 -5.521 -15.284 19.429 hybrid contribution -0.366 0.518 1.029 1.209 sum -11.014 -5.003 -14.255 18.697 Atomic orbital electron populations 1.21322 0.91043 1.01833 1.02423 1.21762 0.95296 0.90820 1.03984 1.21371 1.00447 0.94433 1.01209 1.22866 0.98623 1.02379 0.94334 1.20264 0.94559 0.92289 0.87177 1.42657 1.04934 1.61277 1.30678 1.19046 0.88881 1.23829 1.04422 0.92788 1.25471 1.01395 1.00790 0.97860 1.69882 1.32477 1.41773 1.19458 0.85419 0.80752 0.77157 0.78589 1.20564 1.22123 1.17635 1.21823 0.98142 0.99086 0.90975 1.21420 0.94632 1.01346 1.00408 1.21319 0.98448 0.96707 0.99928 0.92955 0.90603 0.92067 0.93115 0.91320 0.93524 0.88031 0.95151 0.96531 0.80147 0.93364 0.90385 0.92901 0.92707 0.92370 0.90971 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 8.88 71.98 0.64 -1.87 16 2 C -0.12 -3.32 2.70 -52.16 -0.14 -3.46 16 3 C -0.12 -3.68 8.01 71.98 0.58 -3.11 16 4 C -0.16 -5.15 5.09 -10.79 -0.05 -5.21 16 5 C 0.18 7.39 5.16 86.38 0.45 7.84 16 6 N -0.75 -36.62 4.81 -343.46 -1.65 -38.28 16 7 C -0.23 -13.65 10.47 84.03 0.88 -12.76 16 8 H 0.05 3.50 8.06 -2.91 -0.02 3.47 16 9 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 10 N -0.98 -64.64 13.97 21.65 0.30 -64.34 16 11 Si 0.95 46.91 27.74 68.60 1.90 48.81 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 14 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 15 C -0.10 -2.48 2.70 -52.15 -0.14 -2.62 16 16 C -0.12 -2.93 8.28 71.98 0.60 -2.34 16 17 C -0.11 -1.99 8.80 71.98 0.63 -1.36 16 18 H 0.05 1.25 7.92 -2.39 -0.02 1.23 16 19 H 0.08 1.42 8.02 -2.39 -0.02 1.40 16 20 H 0.06 1.32 7.77 -2.39 -0.02 1.30 16 21 H 0.05 1.90 5.08 -2.39 -0.01 1.89 16 22 H 0.07 1.82 7.85 -2.39 -0.02 1.80 16 23 H 0.05 1.50 7.92 -2.39 -0.02 1.48 16 24 H 0.10 3.10 7.96 -2.39 -0.02 3.08 16 25 H 0.03 1.25 5.22 -2.39 -0.01 1.24 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 27 H 0.37 17.23 5.53 -92.71 -0.51 16.71 16 28 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 29 H 0.08 1.49 8.02 -2.39 -0.02 1.47 16 30 H 0.05 1.41 5.61 -2.38 -0.01 1.40 16 31 H 0.05 1.38 7.84 -2.39 -0.02 1.36 16 32 H 0.06 1.06 7.78 -2.38 -0.02 1.05 16 33 H 0.07 1.15 8.02 -2.39 -0.02 1.13 16 34 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 Total: -1.00 -67.12 265.99 4.94 -62.18 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.49 Total: 19.93 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 3.90 Total: -28.30 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -1.35 Total: -102.61 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.81 kcal Total: -67.12 4.94 -62.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086240081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.979 kcal (2) G-P(sol) polarization free energy of solvation -67.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds