Wall clock time and date at job start Mon Mar 30 2020 02:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47056 * 2 1 4 4 C 1.53000 * 109.47056 * 179.97438 * 3 2 1 5 5 C 1.53935 * 113.73546 * 271.72994 * 4 3 2 6 6 N 1.47961 * 86.18275 * 221.92129 * 5 4 3 7 7 C 1.46903 * 110.99957 * 137.57901 * 6 5 4 8 8 H 1.08994 * 109.47205 * 314.04640 * 7 6 5 9 9 C 1.52999 * 109.46848 * 74.04728 * 7 6 5 10 10 C 1.50702 * 109.46646 * 194.04378 * 7 6 5 11 11 H 1.07988 * 120.00370 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99272 * 180.02562 * 10 7 6 13 13 N 1.31507 * 120.00680 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99715 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47245 * 89.99694 * 14 12 10 16 16 H 1.48503 * 109.47176 * 209.99944 * 14 12 10 17 17 H 1.48506 * 109.47091 * 329.99885 * 14 12 10 18 18 C 1.47961 * 90.76267 * 24.68721 * 6 5 4 19 19 H 1.08999 * 109.47315 * 60.00083 * 1 2 3 20 20 H 1.09005 * 109.47332 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47192 * 299.99591 * 1 2 3 22 22 H 1.08995 * 109.46838 * 120.00484 * 2 1 3 23 23 H 1.08998 * 109.46690 * 240.00423 * 2 1 3 24 24 H 1.08999 * 109.47440 * 300.00405 * 3 2 1 25 25 H 1.09009 * 109.47079 * 60.00158 * 3 2 1 26 26 H 1.08995 * 112.94083 * 43.43903 * 4 3 2 27 27 H 1.09003 * 113.75851 * 336.23967 * 5 4 3 28 28 H 1.09000 * 113.76045 * 107.60238 * 5 4 3 29 29 H 1.09010 * 109.47171 * 66.31548 * 9 7 6 30 30 H 1.09002 * 109.47231 * 186.31469 * 9 7 6 31 31 H 1.08993 * 109.47438 * 306.31675 * 9 7 6 32 32 H 0.97001 * 120.00840 * 180.02562 * 13 12 10 33 33 H 1.08994 * 113.76391 * 220.99108 * 18 6 5 34 34 H 1.09000 * 113.85618 * 89.64088 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.1890 1.4001 1.4094 6 7 5.1551 2.4020 0.9074 7 6 5.3851 3.4569 1.9035 8 1 4.4291 3.7889 2.3084 9 6 6.2556 2.9081 3.0357 10 6 6.0854 4.6205 1.2503 11 1 6.3343 4.5806 0.2003 12 6 6.4082 5.7361 1.9935 13 7 6.1056 5.7846 3.2724 14 14 7.2756 7.1788 1.1837 15 1 6.2655 8.1298 0.6541 16 1 8.1283 7.8689 2.1847 17 1 8.1227 6.6845 0.0686 18 6 4.1896 2.8462 -0.1221 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8899 25 1 1.6766 1.9563 0.8901 26 1 3.9951 0.7135 -0.6892 27 1 3.5296 1.7788 2.1904 28 1 4.6418 0.4412 1.6615 29 1 7.2501 2.6805 2.6518 30 1 6.3336 3.6529 3.8278 31 1 5.8034 2.0000 3.4342 32 1 6.3324 6.5695 3.7951 33 1 4.6429 3.0428 -1.0936 34 1 3.5297 3.6480 0.2092 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:37 Heat of formation + Delta-G solvation = 10.538555 kcal Electronic energy + Delta-G solvation = -12806.955484 eV Core-core repulsion = 10740.063075 eV Total energy + Delta-G solvation = -2066.892410 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.23080 -34.86286 -33.23473 -30.51212 -27.87144 -25.92746 -24.44230 -24.01732 -21.27602 -19.55971 -18.90275 -16.28096 -15.39437 -15.04334 -14.56337 -14.05494 -13.47075 -13.12364 -12.67693 -12.25038 -12.14149 -11.80442 -11.47422 -11.15861 -10.96440 -10.80137 -10.76966 -10.61764 -10.49577 -10.13407 -9.96047 -9.76306 -9.21825 -8.82607 -8.43844 -7.56471 -5.98784 -4.03016 3.31776 3.38148 3.42977 4.43583 4.85609 4.99428 5.02824 5.24865 5.31954 5.33505 5.57304 5.80885 5.87647 5.94621 6.02663 6.08089 6.24724 6.27753 6.38919 6.42720 6.43865 6.56655 6.79576 6.85609 6.95781 7.11043 7.43989 7.52651 7.85273 8.10993 8.33478 8.55543 9.03233 9.61810 11.08542 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.057424 B = 0.007759 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.483414 B = 3607.723093 C = 3787.766215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.122 4.122 5 C 0.005 3.995 6 N -0.477 5.477 7 C 0.180 3.820 8 H 0.004 0.996 9 C -0.125 4.125 10 C -0.502 4.502 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.025 3.975 19 H 0.051 0.949 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.071 0.929 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 -8.111 -4.726 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.141 4.141 5 C -0.124 4.124 6 N -0.200 5.200 7 C 0.073 3.927 8 H 0.021 0.979 9 C -0.184 4.184 10 C -0.541 4.541 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.104 4.104 19 H 0.070 0.930 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.133 -8.163 -4.730 11.827 hybrid contribution -0.236 1.229 0.051 1.252 sum -7.369 -6.934 -4.679 11.148 Atomic orbital electron populations 1.21789 0.96420 1.01095 1.01663 1.21505 0.95213 0.97395 1.01830 1.21627 0.95210 0.96252 1.01801 1.23114 0.93930 0.98900 0.98172 1.23838 0.94981 0.98450 0.95141 1.68523 1.30011 1.11207 1.10275 1.19758 0.95034 0.88657 0.89284 0.97868 1.21686 0.98729 0.97756 1.00185 1.21077 1.37708 0.99255 0.96072 0.92195 1.24939 0.95963 0.98479 0.94858 1.69904 1.47835 1.29266 1.06367 0.86527 0.79586 0.82352 0.79128 1.20793 1.21250 1.19858 1.23597 0.94194 0.94511 0.98086 0.92968 0.93180 0.92854 0.92065 0.92302 0.92130 0.92078 0.89383 0.92408 0.91188 0.94717 0.90194 0.97549 0.93035 0.91036 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.40 5.92 -26.73 -0.16 -1.55 16 3 C -0.11 -1.50 5.07 -26.73 -0.14 -1.64 16 4 C -0.12 -1.97 3.84 -89.69 -0.34 -2.32 16 5 C 0.01 0.10 6.74 -2.77 -0.02 0.08 16 6 N -0.48 -10.79 5.97 -231.66 -1.38 -12.17 16 7 C 0.18 4.72 1.65 -68.86 -0.11 4.60 16 8 H 0.00 0.10 7.69 -51.93 -0.40 -0.29 16 9 C -0.13 -3.21 9.05 37.16 0.34 -2.87 16 10 C -0.50 -14.25 8.20 -34.44 -0.28 -14.53 16 11 H 0.06 1.71 7.69 -52.49 -0.40 1.31 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -26.07 11.39 55.43 0.63 -25.44 16 14 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.03 0.50 6.82 -2.76 -0.02 0.48 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 20 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.88 7.84 -51.92 -0.41 0.47 16 26 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 27 H 0.06 1.11 7.47 -51.93 -0.39 0.72 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.03 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.08 2.20 6.26 -51.93 -0.33 1.87 16 31 H 0.01 0.13 7.52 -51.93 -0.39 -0.26 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.06 1.33 7.81 -51.93 -0.41 0.92 16 LS Contribution 272.71 15.07 4.11 4.11 Total: -1.00 -29.11 272.71 -8.20 -37.31 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.08 Total: -3.22 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -0.46 Total: -17.34 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.75 Total: -37.61 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.11 -8.20 -37.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.851 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds