Wall clock time and date at job start Mon Mar 30 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.53936 * 113.73621 * 271.72791 * 4 3 2 6 6 N 1.47963 * 86.18180 * 221.92121 * 5 4 3 7 7 C 1.46904 * 110.99806 * 137.58078 * 6 5 4 8 8 H 1.08993 * 109.47591 * 315.63996 * 7 6 5 9 9 C 1.52996 * 109.46959 * 195.63876 * 7 6 5 10 10 C 1.50703 * 109.46785 * 75.64329 * 7 6 5 11 11 H 1.07997 * 120.00217 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99791 * 180.02562 * 10 7 6 13 13 N 1.31517 * 120.00061 * 359.97438 * 12 10 7 14 14 Si 1.86807 * 120.00175 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46855 * 59.99471 * 14 12 10 16 16 H 1.48494 * 109.47189 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46713 * 299.99917 * 14 12 10 18 18 C 1.47963 * 90.76149 * 24.69010 * 6 5 4 19 19 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 20 20 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 22 22 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 23 23 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 24 24 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.08999 * 112.94032 * 43.43553 * 4 3 2 27 27 H 1.08998 * 113.75883 * 336.23899 * 5 4 3 28 28 H 1.08999 * 113.75852 * 107.60370 * 5 4 3 29 29 H 1.09004 * 109.47546 * 300.00525 * 9 7 6 30 30 H 1.09006 * 109.47190 * 60.00254 * 9 7 6 31 31 H 1.08998 * 109.47424 * 180.02562 * 9 7 6 32 32 H 0.97001 * 119.99704 * 180.02562 * 13 12 10 33 33 H 1.09001 * 113.75885 * 220.98880 * 18 6 5 34 34 H 1.09002 * 113.85916 * 89.64514 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.1891 1.4001 1.4094 6 7 5.1552 2.4020 0.9073 7 6 5.3852 3.4569 1.9035 8 1 4.4316 3.7691 2.3289 9 6 6.0604 4.6542 1.2316 10 6 6.2749 2.9279 2.9988 11 1 6.6332 1.9099 2.9592 12 6 6.6305 3.7434 4.0521 13 7 6.1938 4.9830 4.1007 14 14 7.7339 3.0881 5.4096 15 1 9.0335 2.6638 4.8296 16 1 7.9663 4.1544 6.4166 17 1 7.0795 1.9252 6.0613 18 6 4.1897 2.8462 -0.1221 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.9951 0.7134 -0.6892 27 1 3.5297 1.7788 2.1904 28 1 4.6419 0.4412 1.6615 29 1 7.0142 4.3420 0.8061 30 1 5.4169 5.0368 0.4393 31 1 6.2315 5.4368 1.9708 32 1 6.4443 5.5568 4.8416 33 1 4.6430 3.0428 -1.0937 34 1 3.5298 3.6481 0.2091 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:38 Heat of formation + Delta-G solvation = -7.240999 kcal Electronic energy + Delta-G solvation = -12808.893642 eV Core-core repulsion = 10741.230253 eV Total energy + Delta-G solvation = -2067.663389 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.84074 -36.28074 -34.97618 -32.36188 -29.26458 -27.82509 -26.30397 -25.46920 -22.49087 -21.25904 -20.41832 -18.41496 -17.01907 -16.57959 -15.97698 -15.71620 -15.09068 -14.58948 -14.07191 -13.95106 -13.50089 -13.24570 -13.09877 -12.86413 -12.66000 -12.43532 -12.40918 -12.15970 -11.97348 -11.70711 -11.61144 -11.15172 -10.94540 -10.86333 -10.54752 -9.37975 -8.14226 -6.27132 1.39466 1.41875 1.49759 2.40185 3.12894 3.39072 3.56665 3.85804 4.27387 4.35223 4.42000 4.54588 4.64428 4.74582 4.78975 4.83480 4.84163 4.92934 4.98410 5.00658 5.07756 5.10154 5.27524 5.37263 5.44101 5.48128 5.50957 5.57928 5.68448 6.09171 6.27227 6.58544 6.85445 7.42050 8.91469 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048529 B = 0.008092 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.836821 B = 3459.332735 C = 3746.188383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.094 4.094 5 C 0.018 3.982 6 N -0.496 5.496 7 C 0.185 3.815 8 H -0.029 1.029 9 C -0.120 4.120 10 C -0.521 4.521 11 H 0.050 0.950 12 C 0.010 3.990 13 N -0.921 5.921 14 Si 0.962 3.038 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.271 1.271 18 C 0.001 3.999 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.263 0.737 33 H 0.086 0.914 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 -7.259 -7.527 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.144 4.144 4 C -0.113 4.113 5 C -0.112 4.112 6 N -0.218 5.218 7 C 0.077 3.923 8 H -0.011 1.011 9 C -0.179 4.179 10 C -0.560 4.560 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.561 5.561 14 Si 0.787 3.213 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.197 1.197 18 C -0.128 4.128 19 H 0.078 0.922 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.724 -7.274 -7.584 13.042 hybrid contribution -0.023 0.497 1.351 1.439 sum -7.747 -6.777 -6.234 12.033 Atomic orbital electron populations 1.21768 0.95177 1.02036 1.01800 1.21487 0.96308 0.95793 1.02175 1.21583 0.92997 0.97933 1.01839 1.22968 0.95699 0.96550 0.96078 1.23709 0.93818 0.97279 0.96352 1.68492 1.32209 1.10991 1.10147 1.19550 0.93511 0.89451 0.89774 1.01114 1.21588 0.98360 0.99614 0.98300 1.21292 1.30462 0.98199 1.06011 0.93150 1.25753 0.97627 0.95113 1.00351 1.70008 1.46412 1.07248 1.32397 0.85554 0.79237 0.77974 0.78532 1.19713 1.20573 1.19663 1.23880 0.94338 0.96803 0.97768 0.92150 0.91925 0.93386 0.92724 0.91039 0.90586 0.93414 0.87588 0.93695 0.90888 0.95324 0.95275 0.92106 0.92821 0.89523 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.49 5.92 30.60 0.18 -2.31 16 3 C -0.11 -2.62 5.07 30.59 0.16 -2.47 16 4 C -0.09 -2.86 3.84 -10.15 -0.04 -2.90 16 5 C 0.02 0.69 7.18 86.41 0.62 1.31 16 6 N -0.50 -22.39 5.97 -886.83 -5.29 -27.68 16 7 C 0.18 9.91 1.65 44.17 0.07 9.98 16 8 H -0.03 -1.68 7.68 -2.39 -0.02 -1.70 16 9 C -0.12 -6.21 8.95 71.98 0.64 -5.57 16 10 C -0.52 -30.21 8.46 25.60 0.22 -30.00 16 11 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 12 C 0.01 0.58 5.30 84.65 0.45 1.02 16 13 N -0.92 -54.50 11.32 21.45 0.24 -54.26 16 14 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C 0.00 0.04 6.40 86.41 0.55 0.59 16 19 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 20 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.32 7.84 -2.39 -0.02 1.30 16 26 H 0.11 2.90 8.13 -2.39 -0.02 2.88 16 27 H 0.04 1.91 7.45 -2.39 -0.02 1.89 16 28 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.03 1.31 7.33 -2.38 -0.02 1.29 16 31 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.05 1.93 7.81 -2.39 -0.02 1.92 16 Total: -1.00 -62.33 272.54 1.57 -60.75 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.03 Total: 6.53 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 3.57 Total: -32.29 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -5.05 Total: -81.94 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -62.33 1.57 -60.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.512 kcal (2) G-P(sol) polarization free energy of solvation -62.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds