Wall clock time and date at job start Mon Mar 30 2020 02:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47116 * 2 1 4 4 C 1.53004 * 109.47431 * 179.97438 * 3 2 1 5 5 C 1.53514 * 114.17127 * 184.99576 * 4 3 2 6 6 N 1.47482 * 87.93039 * 220.32880 * 5 4 3 7 7 C 1.46901 * 110.99764 * 138.70591 * 6 5 4 8 8 C 1.53000 * 109.46769 * 169.99993 * 7 6 5 9 9 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99928 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99611 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00327 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46828 * 90.00241 * 13 11 9 15 15 H 1.48494 * 109.47178 * 209.99936 * 13 11 9 16 16 H 1.48500 * 109.47075 * 330.00183 * 13 11 9 17 17 C 1.47480 * 87.83699 * 27.01095 * 6 5 4 18 18 H 1.08997 * 109.47639 * 300.00333 * 1 2 3 19 19 H 1.09002 * 109.46555 * 60.00990 * 1 2 3 20 20 H 1.09003 * 109.46513 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47639 * 239.99667 * 2 1 3 22 22 H 1.09004 * 109.47270 * 119.99163 * 2 1 3 23 23 H 1.08997 * 109.47874 * 59.99467 * 3 2 1 24 24 H 1.09009 * 109.47029 * 299.99473 * 3 2 1 25 25 H 1.08999 * 113.38193 * 318.07811 * 4 3 2 26 26 H 1.08994 * 113.47382 * 105.55723 * 5 4 3 27 27 H 1.09003 * 113.47448 * 335.09631 * 5 4 3 28 28 H 1.09002 * 109.47401 * 49.99700 * 7 6 5 29 29 H 1.09001 * 109.46874 * 289.99713 * 7 6 5 30 30 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 31 31 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 32 32 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 33 33 H 1.08999 * 113.47664 * 87.75895 * 17 6 5 34 34 H 1.08994 * 113.47488 * 218.22090 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.1985 2.8378 0.1227 6 7 5.2022 2.4141 -0.8714 7 6 5.4738 3.4882 -1.8360 8 6 6.6857 3.1116 -2.6906 9 6 6.9647 4.2138 -3.6799 10 1 6.3399 5.0945 -3.6975 11 6 8.0177 4.0977 -4.5624 12 7 8.7789 3.0255 -4.5406 13 14 8.3631 5.4636 -5.7890 14 1 9.3006 6.4449 -5.1861 15 1 8.9715 4.8862 -7.0144 16 1 7.0919 6.1455 -6.1415 17 6 4.1992 1.4706 -1.3994 18 1 -0.3634 0.5139 0.8899 19 1 -0.3632 0.5137 -0.8901 20 1 -0.3632 -1.0277 -0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.8934 -0.5137 0.8901 23 1 1.6767 1.9564 0.8899 24 1 1.6767 1.9563 -0.8901 25 1 4.0024 0.6983 0.6694 26 1 4.6205 3.0394 1.1072 27 1 3.5491 3.6390 -0.2303 28 1 5.6809 4.4143 -1.2999 29 1 4.6048 3.6272 -2.4791 30 1 7.5547 2.9726 -2.0475 31 1 6.4786 2.1855 -3.2268 32 1 9.5199 2.9440 -5.1612 33 1 3.5500 1.9068 -2.1585 34 1 4.6218 0.5135 -1.7047 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681330.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:35 Heat of formation + Delta-G solvation = -14.013357 kcal Electronic energy + Delta-G solvation = -12336.850274 eV Core-core repulsion = 10268.893214 eV Total energy + Delta-G solvation = -2067.957060 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.12852 -36.13857 -35.21601 -32.88377 -29.90316 -27.21589 -26.84922 -24.75569 -22.48936 -21.60928 -20.53812 -18.57025 -16.77266 -16.51280 -16.31359 -16.19136 -15.35110 -14.65571 -14.31047 -13.97585 -13.60772 -13.46479 -13.34810 -12.98985 -12.78011 -12.53098 -12.31875 -11.94720 -11.76796 -11.63364 -11.49412 -11.41311 -11.06527 -10.98517 -10.58457 -9.71735 -8.22264 -6.35396 1.38581 1.41081 1.52099 2.38837 3.10531 3.21653 3.43341 3.78726 4.20140 4.24943 4.33594 4.33974 4.44841 4.48176 4.59897 4.76544 4.78811 4.81431 4.92844 5.00449 5.02764 5.08677 5.25612 5.33984 5.37925 5.45136 5.47475 5.55758 5.73075 5.77864 6.13706 6.29390 6.81735 7.34385 8.90217 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.071615 B = 0.005710 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.885919 B = 4902.092540 C = 4945.786502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.102 4.102 4 C -0.095 4.095 5 C -0.001 4.001 6 N -0.503 5.503 7 C 0.045 3.955 8 C 0.040 3.960 9 C -0.548 4.548 10 H 0.062 0.938 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.971 3.029 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.261 1.261 17 C 0.000 4.000 18 H 0.060 0.940 19 H 0.051 0.949 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.035 0.965 30 H -0.012 1.012 31 H -0.015 1.015 32 H 0.265 0.735 33 H 0.065 0.935 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 -3.015 8.875 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.129 4.129 6 N -0.225 5.225 7 C -0.083 4.083 8 C 0.003 3.997 9 C -0.587 4.587 10 H 0.080 0.920 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.795 3.205 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.129 4.129 18 H 0.079 0.921 19 H 0.070 0.930 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.122 0.878 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.006 0.994 31 H 0.003 0.997 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.283 -3.295 8.983 17.191 hybrid contribution 0.045 0.813 -1.191 1.443 sum -14.237 -2.482 7.792 16.419 Atomic orbital electron populations 1.21769 0.95167 1.01955 1.01950 1.21505 0.96325 0.96169 1.02068 1.21541 0.92217 0.97750 1.02500 1.22720 0.96057 0.96876 0.95703 1.23909 0.93477 0.97585 0.97967 1.68895 1.30594 1.12090 1.10965 1.22520 0.97982 0.94077 0.93716 1.18798 0.92675 0.95069 0.93198 1.21646 1.14040 1.04842 1.18124 0.92023 1.26039 0.95625 0.98508 0.99644 1.70126 1.18826 1.29720 1.38670 0.85364 0.78779 0.78573 0.77810 1.19597 1.20551 1.18551 1.23973 0.93400 0.97974 0.97591 0.92129 0.93033 0.92289 0.92746 0.91426 0.90276 0.92314 0.87811 0.89467 0.91024 0.92235 0.94639 0.99369 0.99660 0.92666 0.91681 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.12 -2.11 5.92 30.59 0.18 -1.93 16 3 C -0.10 -1.95 5.12 30.59 0.16 -1.80 16 4 C -0.09 -2.34 3.99 -10.45 -0.04 -2.39 16 5 C 0.00 -0.02 7.26 83.58 0.61 0.59 16 6 N -0.50 -19.57 6.33 -927.82 -5.88 -25.44 16 7 C 0.05 2.04 4.76 86.30 0.41 2.45 16 8 C 0.04 2.29 5.30 29.85 0.16 2.45 16 9 C -0.55 -32.56 9.11 25.60 0.23 -32.33 16 10 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 11 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 12 N -0.93 -58.93 13.29 21.45 0.28 -58.64 16 13 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 17 C 0.00 -0.01 7.28 83.58 0.61 0.60 16 18 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 19 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 20 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.19 7.81 -2.38 -0.02 1.17 16 25 H 0.10 2.46 8.12 -2.39 -0.02 2.44 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 1.93 7.87 -2.39 -0.02 1.91 16 28 H 0.06 2.61 8.08 -2.39 -0.02 2.59 16 29 H 0.04 1.54 7.30 -2.39 -0.02 1.52 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.07 2.12 7.15 -2.39 -0.02 2.10 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -66.99 278.40 0.95 -66.04 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.02 Total: 4.25 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.49 Total: -33.40 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -5.59 Total: -84.08 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.99 0.95 -66.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681330.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.024 kcal (2) G-P(sol) polarization free energy of solvation -66.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds