Wall clock time and date at job start Mon Mar 30 2020 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47161 * 2 1 4 4 C 1.52995 * 109.47262 * 239.99942 * 2 1 3 5 5 C 1.53003 * 109.47043 * 120.00000 * 2 1 3 6 6 C 1.53511 * 114.17097 * 54.96705 * 5 2 1 7 7 N 1.47476 * 87.93162 * 220.33268 * 6 5 2 8 8 C 1.46900 * 111.00064 * 138.70585 * 7 6 5 9 9 C 1.50702 * 109.47082 * 169.99560 * 8 7 6 10 10 H 1.07998 * 120.00367 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99660 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00393 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99901 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47540 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.46913 * 300.00125 * 13 11 9 16 16 H 1.48503 * 109.47141 * 59.99833 * 13 11 9 17 17 C 1.47477 * 87.83853 * 27.01294 * 7 6 5 18 18 H 1.09000 * 109.46955 * 306.38952 * 1 2 3 19 19 H 1.09006 * 109.47032 * 66.38143 * 1 2 3 20 20 H 1.08989 * 109.47352 * 186.38176 * 1 2 3 21 21 H 1.09006 * 109.47046 * 179.97438 * 3 2 1 22 22 H 1.08996 * 109.46848 * 299.99517 * 3 2 1 23 23 H 1.08998 * 109.47443 * 60.00111 * 3 2 1 24 24 H 1.09008 * 109.47159 * 300.00031 * 4 2 1 25 25 H 1.08996 * 109.47536 * 59.99999 * 4 2 1 26 26 H 1.09001 * 109.47695 * 180.02562 * 4 2 1 27 27 H 1.09002 * 113.38098 * 188.04893 * 5 2 1 28 28 H 1.08998 * 113.47212 * 105.56007 * 6 5 2 29 29 H 1.09000 * 113.47591 * 335.10340 * 6 5 2 30 30 H 1.09001 * 109.46854 * 49.99834 * 8 7 6 31 31 H 1.08997 * 109.46942 * 289.99962 * 8 7 6 32 32 H 0.96993 * 120.00323 * 180.02562 * 12 11 9 33 33 H 1.08991 * 113.47819 * 87.75504 * 17 7 6 34 34 H 1.09001 * 113.47517 * 218.22476 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.4915 -2.1447 1.4212 7 7 1.3647 -1.8643 2.8635 8 6 0.1074 -2.4054 3.3965 9 6 0.1218 -2.3207 4.9011 10 1 0.9791 -1.9059 5.4104 11 6 -0.9599 -2.7717 5.6273 12 7 -2.0041 -3.2764 5.0071 13 14 -0.9424 -2.6661 7.4922 14 1 -2.2133 -3.2132 8.0311 15 1 0.1993 -3.4543 8.0219 16 1 -0.7987 -1.2472 7.9063 17 6 1.2213 -0.4380 2.5167 18 1 -0.3633 0.6097 0.8273 19 1 -0.3633 0.4118 -0.9416 20 1 -0.3633 -1.0212 0.1142 21 1 3.1301 1.4425 0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9564 0.8900 24 1 1.6767 -1.7490 -1.2492 25 1 1.6767 -0.2075 -2.1392 26 1 3.1300 -0.7217 -1.2490 27 1 3.1182 -0.6388 1.3865 28 1 2.2209 -2.9216 1.1922 29 1 0.5347 -2.3043 0.9241 30 1 0.0021 -3.4468 3.0922 31 1 -0.7307 -1.8269 3.0080 32 1 -2.7652 -3.5933 5.5180 33 1 0.1925 -0.1423 2.3120 34 1 1.7219 0.2314 3.2163 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:33 Heat of formation + Delta-G solvation = 18.049040 kcal Electronic energy + Delta-G solvation = -13000.776788 eV Core-core repulsion = 10934.210057 eV Total energy + Delta-G solvation = -2066.566731 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.98143 -35.61157 -32.73216 -29.06647 -27.38134 -27.16915 -25.31687 -24.80852 -21.98234 -19.81588 -17.80292 -16.28506 -15.36796 -15.02939 -14.31459 -14.28840 -13.77116 -13.09354 -12.74604 -12.38758 -12.27659 -11.97253 -11.70978 -11.43228 -11.34807 -11.00059 -10.75840 -10.72743 -10.43028 -10.28443 -10.09825 -9.64963 -9.43705 -9.11667 -8.38495 -7.71354 -5.99518 -4.00444 3.36049 3.39222 3.43104 4.46013 4.80432 4.85471 4.98970 5.28427 5.35323 5.39840 5.58567 5.69994 5.76265 5.83244 5.90128 6.00290 6.06357 6.13408 6.23094 6.24679 6.33447 6.40723 6.46643 6.53143 6.53449 6.76016 6.86322 7.27742 7.73627 7.93500 8.19681 8.54475 9.07106 9.63374 11.11554 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066461 B = 0.007758 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.199283 B = 3608.503359 C = 3665.395255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.111 4.111 6 C -0.002 4.002 7 N -0.470 5.470 8 C 0.160 3.840 9 C -0.504 4.504 10 H 0.062 0.938 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.899 3.101 14 H -0.288 1.288 15 H -0.276 1.276 16 H -0.277 1.277 17 C 0.010 3.990 18 H 0.060 0.940 19 H 0.049 0.951 20 H 0.059 0.941 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.002 0.998 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 6.698 -10.525 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.060 4.060 3 C -0.194 4.194 4 C -0.194 4.194 5 C -0.129 4.129 6 C -0.131 4.131 7 N -0.192 5.192 8 C 0.034 3.966 9 C -0.542 4.542 10 H 0.080 0.920 11 C -0.148 4.148 12 N -0.541 5.541 13 Si 0.727 3.273 14 H -0.213 1.213 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.119 4.119 18 H 0.079 0.921 19 H 0.068 0.932 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.003 6.359 -9.974 13.265 hybrid contribution -0.890 0.135 0.574 1.068 sum 5.113 6.494 -9.400 12.517 Atomic orbital electron populations 1.22057 0.94801 1.02400 1.01219 1.20431 0.95496 0.95155 0.94915 1.21815 1.00623 0.95606 1.01381 1.21809 1.00680 1.00404 0.96542 1.22858 0.99802 0.96284 0.93996 1.23794 0.99867 0.96329 0.93125 1.68918 1.35777 1.03799 1.10705 1.20229 0.84947 0.95330 0.96122 1.21100 1.02039 1.40080 0.91023 0.91994 1.25009 0.95449 0.95449 0.98853 1.69946 1.06412 1.42101 1.35671 0.86543 0.77139 0.78361 0.85266 1.21347 1.20169 1.20277 1.23839 0.99095 0.94139 0.94847 0.92139 0.93192 0.92167 0.92930 0.93182 0.92559 0.92567 0.93192 0.92911 0.89035 0.91402 0.92010 0.95610 0.98049 0.92919 0.91357 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 7.41 37.16 0.28 -1.75 16 2 C -0.06 -0.77 0.71 -154.51 -0.11 -0.88 16 3 C -0.14 -1.57 8.46 37.16 0.31 -1.26 16 4 C -0.14 -1.57 8.33 37.16 0.31 -1.26 16 5 C -0.11 -1.75 3.36 -90.09 -0.30 -2.05 16 6 C 0.00 -0.03 6.39 -7.55 -0.05 -0.08 16 7 N -0.47 -10.72 6.32 -246.10 -1.55 -12.27 16 8 C 0.16 4.34 4.57 -4.97 -0.02 4.32 16 9 C -0.50 -14.86 9.39 -34.44 -0.32 -15.18 16 10 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 11 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 13 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 17 C 0.01 0.19 7.01 -7.55 -0.05 0.14 16 18 H 0.06 0.87 6.52 -51.93 -0.34 0.54 16 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.06 0.91 6.04 -51.94 -0.31 0.60 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.67 7.64 -51.92 -0.40 0.27 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.15 5.83 -51.93 -0.30 0.84 16 30 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.00 0.05 7.30 -51.93 -0.38 -0.33 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.07 1.35 4.95 -51.93 -0.26 1.09 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 267.30 15.07 4.03 4.03 Total: -1.00 -30.47 267.30 -7.62 -38.10 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.76 Total: -3.85 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.06 Total: -16.55 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.82 Total: -38.97 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.47 -7.62 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.148 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds