Wall clock time and date at job start Mon Mar 30 2020 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47161 * 2 1 4 4 C 1.52995 * 109.47262 * 239.99942 * 2 1 3 5 5 C 1.53003 * 109.47043 * 120.00000 * 2 1 3 6 6 C 1.53511 * 114.17097 * 54.96705 * 5 2 1 7 7 N 1.47476 * 87.93162 * 220.33268 * 6 5 2 8 8 C 1.46900 * 111.00064 * 138.70585 * 7 6 5 9 9 C 1.50702 * 109.47082 * 169.99560 * 8 7 6 10 10 H 1.07998 * 120.00367 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99660 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00393 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99901 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47540 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.46913 * 300.00125 * 13 11 9 16 16 H 1.48503 * 109.47141 * 59.99833 * 13 11 9 17 17 C 1.47477 * 87.83853 * 27.01294 * 7 6 5 18 18 H 1.09000 * 109.46955 * 306.38952 * 1 2 3 19 19 H 1.09006 * 109.47032 * 66.38143 * 1 2 3 20 20 H 1.08989 * 109.47352 * 186.38176 * 1 2 3 21 21 H 1.09006 * 109.47046 * 179.97438 * 3 2 1 22 22 H 1.08996 * 109.46848 * 299.99517 * 3 2 1 23 23 H 1.08998 * 109.47443 * 60.00111 * 3 2 1 24 24 H 1.09008 * 109.47159 * 300.00031 * 4 2 1 25 25 H 1.08996 * 109.47536 * 59.99999 * 4 2 1 26 26 H 1.09001 * 109.47695 * 180.02562 * 4 2 1 27 27 H 1.09002 * 113.38098 * 188.04893 * 5 2 1 28 28 H 1.08998 * 113.47212 * 105.56007 * 6 5 2 29 29 H 1.09000 * 113.47591 * 335.10340 * 6 5 2 30 30 H 1.09001 * 109.46854 * 49.99834 * 8 7 6 31 31 H 1.08997 * 109.46942 * 289.99962 * 8 7 6 32 32 H 0.96993 * 120.00323 * 180.02562 * 12 11 9 33 33 H 1.08991 * 113.47819 * 87.75504 * 17 7 6 34 34 H 1.09001 * 113.47517 * 218.22476 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.4915 -2.1447 1.4212 7 7 1.3647 -1.8643 2.8635 8 6 0.1074 -2.4054 3.3965 9 6 0.1218 -2.3207 4.9011 10 1 0.9791 -1.9059 5.4104 11 6 -0.9599 -2.7717 5.6273 12 7 -2.0041 -3.2764 5.0071 13 14 -0.9424 -2.6661 7.4922 14 1 -2.2133 -3.2132 8.0311 15 1 0.1993 -3.4543 8.0219 16 1 -0.7987 -1.2472 7.9063 17 6 1.2213 -0.4380 2.5167 18 1 -0.3633 0.6097 0.8273 19 1 -0.3633 0.4118 -0.9416 20 1 -0.3633 -1.0212 0.1142 21 1 3.1301 1.4425 0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9564 0.8900 24 1 1.6767 -1.7490 -1.2492 25 1 1.6767 -0.2075 -2.1392 26 1 3.1300 -0.7217 -1.2490 27 1 3.1182 -0.6388 1.3865 28 1 2.2209 -2.9216 1.1922 29 1 0.5347 -2.3043 0.9241 30 1 0.0021 -3.4468 3.0922 31 1 -0.7307 -1.8269 3.0080 32 1 -2.7652 -3.5933 5.5180 33 1 0.1925 -0.1423 2.3120 34 1 1.7219 0.2314 3.2163 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:33 Heat of formation + Delta-G solvation = -2.578650 kcal Electronic energy + Delta-G solvation = -13001.671271 eV Core-core repulsion = 10934.210057 eV Total energy + Delta-G solvation = -2067.461214 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.47208 -36.93788 -34.90897 -30.99691 -28.40131 -28.20873 -27.22157 -26.30751 -23.84268 -21.35448 -19.14924 -18.43333 -16.98154 -16.58446 -16.11700 -15.72651 -14.95081 -14.63542 -14.35807 -13.97949 -13.67187 -13.32252 -13.00291 -12.86988 -12.82267 -12.48536 -12.36605 -12.25498 -12.05711 -11.81634 -11.51890 -11.30762 -10.99828 -10.89075 -10.62934 -9.53889 -8.24775 -6.35998 1.37403 1.41471 1.49748 2.37669 3.06550 3.40005 3.49108 3.81844 4.05897 4.21650 4.34582 4.49087 4.63042 4.68670 4.72541 4.82871 4.84281 4.90085 4.97761 4.98603 5.02466 5.11867 5.13692 5.21235 5.31353 5.40622 5.54906 5.59074 5.62490 5.80050 6.10245 6.49983 6.78614 7.33815 8.86205 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066461 B = 0.007758 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.199283 B = 3608.503359 C = 3665.395255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.082 4.082 6 C -0.004 4.004 7 N -0.493 5.493 8 C 0.177 3.823 9 C -0.531 4.531 10 H 0.057 0.943 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.972 3.028 14 H -0.278 1.278 15 H -0.268 1.268 16 H -0.267 1.267 17 C 0.005 3.995 18 H 0.046 0.954 19 H 0.072 0.928 20 H 0.038 0.962 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.057 0.943 30 H -0.005 1.005 31 H -0.022 1.022 32 H 0.266 0.734 33 H 0.060 0.940 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.792 7.741 -10.890 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 C -0.191 4.191 4 C -0.192 4.192 5 C -0.101 4.101 6 C -0.133 4.133 7 N -0.216 5.216 8 C 0.050 3.950 9 C -0.569 4.569 10 H 0.075 0.925 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.796 3.204 14 H -0.203 1.203 15 H -0.193 1.193 16 H -0.192 1.192 17 C -0.124 4.124 18 H 0.065 0.935 19 H 0.091 0.909 20 H 0.057 0.943 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.013 0.987 31 H -0.005 1.005 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.107 7.410 -10.356 14.583 hybrid contribution -1.236 -0.196 0.636 1.404 sum 5.871 7.214 -9.719 13.453 Atomic orbital electron populations 1.22050 0.95641 1.00913 1.01854 1.20438 0.94770 0.96305 0.94149 1.21792 1.01396 0.94046 1.01899 1.21788 1.01447 0.99826 0.96100 1.22763 0.99880 0.93834 0.93587 1.23865 1.00224 0.98779 0.90423 1.68850 1.33031 1.06059 1.13621 1.19872 0.86337 0.93318 0.95444 1.21428 1.02301 1.40792 0.92385 0.92500 1.25972 0.94769 0.94561 1.04423 1.70071 1.07054 1.42457 1.37865 0.85394 0.77624 0.78892 0.78462 1.20336 1.19329 1.19189 1.23883 0.99519 0.92061 0.96911 0.93501 0.90949 0.94304 0.91693 0.91411 0.93402 0.93430 0.91399 0.91692 0.87636 0.90380 0.92469 0.98670 1.00461 0.92523 0.92232 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 7.41 71.98 0.53 -3.39 16 2 C -0.06 -1.34 0.71 -52.18 -0.04 -1.38 16 3 C -0.13 -2.67 8.46 71.98 0.61 -2.06 16 4 C -0.13 -2.68 8.33 71.98 0.60 -2.08 16 5 C -0.08 -2.48 3.36 -10.45 -0.04 -2.51 16 6 C 0.00 -0.15 6.39 83.57 0.53 0.39 16 7 N -0.49 -22.98 6.32 -932.52 -5.89 -28.87 16 8 C 0.18 10.04 4.57 85.56 0.39 10.43 16 9 C -0.53 -32.08 9.39 25.60 0.24 -31.84 16 10 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 11 C 0.00 0.05 5.46 84.65 0.46 0.51 16 12 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 13 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.01 0.21 7.01 83.58 0.59 0.79 16 18 H 0.05 1.35 6.52 -2.39 -0.02 1.34 16 19 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 20 H 0.04 1.18 6.04 -2.39 -0.01 1.17 16 21 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.03 7.64 -2.38 -0.02 1.01 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.06 2.18 5.83 -2.39 -0.01 2.17 16 30 H 0.00 -0.29 8.08 -2.39 -0.02 -0.31 16 31 H -0.02 -1.34 7.30 -2.39 -0.02 -1.35 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.06 2.43 4.95 -2.39 -0.01 2.42 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -66.23 267.30 1.35 -64.89 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.04 Total: 4.99 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 3.88 Total: -31.15 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -5.60 Total: -86.53 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -66.23 1.35 -64.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.308 kcal (2) G-P(sol) polarization free energy of solvation -66.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds