Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46631 * 2 1 4 4 H 1.08992 * 109.47532 * 303.90861 * 3 2 1 5 5 C 1.50707 * 109.46730 * 183.91247 * 3 2 1 6 6 H 1.08003 * 120.00089 * 304.73242 * 5 3 2 7 7 C 1.37878 * 119.99977 * 124.72890 * 5 3 2 8 8 N 1.31507 * 120.00147 * 170.71421 * 7 5 3 9 9 Si 1.86804 * 119.99919 * 350.71532 * 7 5 3 10 10 H 1.48504 * 109.47044 * 84.68782 * 9 7 5 11 11 H 1.48497 * 109.46900 * 204.68781 * 9 7 5 12 12 H 1.48502 * 109.47128 * 324.68767 * 9 7 5 13 13 N 1.46896 * 109.47210 * 63.91837 * 3 2 1 14 14 C 1.47963 * 111.00102 * 176.68204 * 13 3 2 15 15 C 1.53932 * 86.18230 * 222.41623 * 14 13 3 16 16 C 1.52997 * 113.73705 * 138.07791 * 15 14 13 17 17 C 1.52998 * 109.47484 * 176.89824 * 16 15 14 18 18 C 1.48186 * 111.07309 * 77.24678 * 13 3 2 19 19 H 1.09002 * 109.46635 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47194 * 300.00044 * 1 2 3 21 21 H 1.09002 * 109.47214 * 60.00021 * 1 2 3 22 22 H 1.08999 * 109.47194 * 239.99955 * 2 1 3 23 23 H 1.09000 * 109.46818 * 120.00326 * 2 1 3 24 24 H 0.97004 * 120.00407 * 180.02562 * 8 7 5 25 25 H 1.09001 * 113.76005 * 108.09647 * 14 13 3 26 26 H 1.09004 * 113.85897 * 336.74809 * 14 13 3 27 27 H 1.09008 * 113.73137 * 269.25492 * 15 14 13 28 28 H 1.08995 * 109.47330 * 296.90289 * 16 15 14 29 29 H 1.09000 * 109.46802 * 56.89998 * 16 15 14 30 30 H 1.09008 * 109.47025 * 300.00337 * 17 16 15 31 31 H 1.09005 * 109.47141 * 59.99555 * 17 16 15 32 32 H 1.08996 * 109.47355 * 180.02562 * 17 16 15 33 33 H 1.08998 * 113.76346 * 23.24012 * 18 13 3 34 34 H 1.08998 * 113.82791 * 251.80957 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6206 1.9762 -0.8528 5 6 3.5439 1.4437 -0.0970 6 1 4.1319 0.8938 0.6231 7 6 4.1692 2.1466 -1.1049 8 7 5.4751 2.3006 -1.0868 9 14 3.1614 2.8802 -2.4962 10 1 2.6370 4.2063 -2.0817 11 1 4.0193 3.0406 -3.6976 12 1 2.0267 1.9769 -2.8152 13 7 1.6290 2.1071 1.2439 14 6 2.1723 3.4816 1.3152 15 6 2.4838 3.1716 2.7905 16 6 3.8499 3.6829 3.2520 17 6 4.0258 3.3926 4.7439 18 6 2.4840 1.6881 2.3794 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 5.9150 2.7954 -1.7958 25 1 1.4201 4.2587 1.1791 26 1 3.0600 3.6372 0.7022 27 1 1.6775 3.4373 3.4743 28 1 4.6356 3.1794 2.6888 29 1 3.9122 4.7577 3.0812 30 1 3.2400 3.8962 5.3071 31 1 3.9633 2.3179 4.9148 32 1 4.9988 3.7573 5.0728 33 1 3.4632 1.3161 2.0781 34 1 1.9805 1.0349 3.0921 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681512.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = 15.596896 kcal Electronic energy + Delta-G solvation = -13392.886275 eV Core-core repulsion = 11326.213212 eV Total energy + Delta-G solvation = -2066.673064 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.20075 -34.41964 -32.21378 -31.85178 -28.06256 -25.49283 -25.12540 -22.92406 -21.59811 -19.18850 -18.49031 -16.87913 -15.19727 -14.74545 -14.26524 -13.86683 -13.42863 -12.94268 -12.57293 -12.36448 -12.11075 -11.81302 -11.68255 -11.08598 -10.94345 -10.81319 -10.74862 -10.37566 -10.15507 -9.75382 -9.66727 -9.56698 -9.17617 -9.09780 -8.63271 -7.38503 -6.18609 -4.19473 3.23120 3.31834 3.35301 4.33278 5.03228 5.25471 5.29822 5.50304 5.73142 5.87452 5.92662 6.09029 6.11866 6.18183 6.27505 6.39951 6.47211 6.51871 6.56184 6.67290 6.73361 6.74462 6.82643 6.87681 6.95435 7.13188 7.27943 7.37437 7.60698 7.64739 8.29972 8.43816 8.85804 9.45723 10.93028 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.015955 C = 0.011816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.352930 B = 1754.468917 C = 2369.051453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.138 3.862 4 H 0.043 0.957 5 C -0.537 4.537 6 H 0.079 0.921 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.870 3.130 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.489 5.489 14 C 0.009 3.991 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.145 4.145 18 C 0.012 3.988 19 H 0.032 0.968 20 H 0.058 0.942 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.264 0.736 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 1.235 5.620 7.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C 0.031 3.969 4 H 0.061 0.939 5 C -0.576 4.576 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.698 3.302 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.211 5.211 14 C -0.120 4.120 15 C -0.133 4.133 16 C -0.153 4.153 17 C -0.203 4.203 18 C -0.116 4.116 19 H 0.051 0.949 20 H 0.077 0.923 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.712 1.182 5.512 8.025 hybrid contribution 0.467 0.484 -1.076 1.269 sum -5.245 1.666 4.435 7.068 Atomic orbital electron populations 1.21756 0.97801 0.99174 1.01414 1.21477 0.93486 0.98488 1.00478 1.20145 0.94616 0.91784 0.90400 0.93916 1.21420 0.90355 1.31737 1.14057 0.90307 1.25091 0.94709 0.95084 0.97474 1.69923 1.08670 1.40833 1.33382 0.86968 0.80528 0.80142 0.82567 1.19957 1.21556 1.19102 1.68796 1.44516 1.02660 1.05151 1.23782 0.99570 0.93081 0.95534 1.22905 0.96388 0.97527 0.96496 1.21505 0.97856 1.00497 0.95486 1.21723 1.00376 1.01343 0.96832 1.23929 0.99230 0.94755 0.93730 0.94853 0.92263 0.94164 0.92973 0.93335 0.92559 0.92460 0.89379 0.90533 0.90895 0.92801 0.93540 0.92902 0.93526 0.88754 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.79 37.16 0.36 -2.28 16 2 C -0.10 -2.14 5.46 -26.73 -0.15 -2.29 16 3 C 0.14 3.24 1.90 -68.86 -0.13 3.11 16 4 H 0.04 1.06 4.78 -51.93 -0.25 0.81 16 5 C -0.54 -14.23 6.39 -34.44 -0.22 -14.45 16 6 H 0.08 2.27 6.41 -52.48 -0.34 1.93 16 7 C 0.08 2.21 4.79 -17.82 -0.09 2.12 16 8 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 9 Si 0.87 21.28 26.92 -169.99 -4.58 16.70 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.40 6.79 56.52 0.38 -6.02 16 13 N -0.49 -10.56 5.62 -231.46 -1.30 -11.86 16 14 C 0.01 0.20 7.35 -2.76 -0.02 0.18 16 15 C -0.11 -2.09 3.82 -89.69 -0.34 -2.43 16 16 C -0.12 -1.97 5.77 -26.73 -0.15 -2.13 16 17 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 18 C 0.01 0.25 6.75 -2.63 -0.02 0.23 16 19 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.05 1.02 7.71 -51.93 -0.40 0.62 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.09 2.12 6.14 -51.93 -0.32 1.80 16 27 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 28 H 0.07 1.44 7.88 -51.93 -0.41 1.03 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 2.14 5.03 -51.93 -0.26 1.88 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 264.81 15.07 3.99 3.99 Total: -1.00 -27.44 264.81 -7.25 -34.69 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.75 Total: 1.31 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -0.38 Total: -19.64 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.53 Total: -37.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.58 Total: 16.70 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.44 -7.25 -34.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681512.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.289 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds