Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46631 * 2 1 4 4 H 1.08992 * 109.47532 * 303.90861 * 3 2 1 5 5 C 1.50707 * 109.46730 * 183.91247 * 3 2 1 6 6 H 1.08003 * 120.00089 * 304.73242 * 5 3 2 7 7 C 1.37878 * 119.99977 * 124.72890 * 5 3 2 8 8 N 1.31507 * 120.00147 * 170.71421 * 7 5 3 9 9 Si 1.86804 * 119.99919 * 350.71532 * 7 5 3 10 10 H 1.48504 * 109.47044 * 84.68782 * 9 7 5 11 11 H 1.48497 * 109.46900 * 204.68781 * 9 7 5 12 12 H 1.48502 * 109.47128 * 324.68767 * 9 7 5 13 13 N 1.46896 * 109.47210 * 63.91837 * 3 2 1 14 14 C 1.47963 * 111.00102 * 176.68204 * 13 3 2 15 15 C 1.53932 * 86.18230 * 222.41623 * 14 13 3 16 16 C 1.52997 * 113.73705 * 138.07791 * 15 14 13 17 17 C 1.52998 * 109.47484 * 176.89824 * 16 15 14 18 18 C 1.48186 * 111.07309 * 77.24678 * 13 3 2 19 19 H 1.09002 * 109.46635 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47194 * 300.00044 * 1 2 3 21 21 H 1.09002 * 109.47214 * 60.00021 * 1 2 3 22 22 H 1.08999 * 109.47194 * 239.99955 * 2 1 3 23 23 H 1.09000 * 109.46818 * 120.00326 * 2 1 3 24 24 H 0.97004 * 120.00407 * 180.02562 * 8 7 5 25 25 H 1.09001 * 113.76005 * 108.09647 * 14 13 3 26 26 H 1.09004 * 113.85897 * 336.74809 * 14 13 3 27 27 H 1.09008 * 113.73137 * 269.25492 * 15 14 13 28 28 H 1.08995 * 109.47330 * 296.90289 * 16 15 14 29 29 H 1.09000 * 109.46802 * 56.89998 * 16 15 14 30 30 H 1.09008 * 109.47025 * 300.00337 * 17 16 15 31 31 H 1.09005 * 109.47141 * 59.99555 * 17 16 15 32 32 H 1.08996 * 109.47355 * 180.02562 * 17 16 15 33 33 H 1.08998 * 113.76346 * 23.24012 * 18 13 3 34 34 H 1.08998 * 113.82791 * 251.80957 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6206 1.9762 -0.8528 5 6 3.5439 1.4437 -0.0970 6 1 4.1319 0.8938 0.6231 7 6 4.1692 2.1466 -1.1049 8 7 5.4751 2.3006 -1.0868 9 14 3.1614 2.8802 -2.4962 10 1 2.6370 4.2063 -2.0817 11 1 4.0193 3.0406 -3.6976 12 1 2.0267 1.9769 -2.8152 13 7 1.6290 2.1071 1.2439 14 6 2.1723 3.4816 1.3152 15 6 2.4838 3.1716 2.7905 16 6 3.8499 3.6829 3.2520 17 6 4.0258 3.3926 4.7439 18 6 2.4840 1.6881 2.3794 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 5.9150 2.7954 -1.7958 25 1 1.4201 4.2587 1.1791 26 1 3.0600 3.6372 0.7022 27 1 1.6775 3.4373 3.4743 28 1 4.6356 3.1794 2.6888 29 1 3.9122 4.7577 3.0812 30 1 3.2400 3.8962 5.3071 31 1 3.9633 2.3179 4.9148 32 1 4.9988 3.7573 5.0728 33 1 3.4632 1.3161 2.0781 34 1 1.9805 1.0349 3.0921 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681512.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = -2.008323 kcal Electronic energy + Delta-G solvation = -13393.649695 eV Core-core repulsion = 11326.213212 eV Total energy + Delta-G solvation = -2067.436483 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.89766 -36.11603 -34.22068 -33.33072 -29.79880 -27.21238 -26.81597 -24.63376 -23.09109 -20.84872 -20.31837 -18.86738 -16.98843 -16.33108 -16.13812 -15.47728 -14.93580 -14.82716 -14.15064 -13.97557 -13.70238 -13.56924 -13.26570 -12.76176 -12.65060 -12.44650 -12.23577 -11.90691 -11.79056 -11.66822 -11.36988 -11.19290 -10.95177 -10.83914 -10.71461 -9.21174 -8.32946 -6.35926 1.27494 1.30951 1.39484 2.28421 3.00317 3.52305 3.73826 4.04813 4.25410 4.43731 4.50451 4.58486 4.62680 4.74378 4.75357 4.82384 4.94560 5.02291 5.07228 5.10378 5.18928 5.21432 5.27784 5.32967 5.43335 5.48654 5.57716 5.61373 5.75635 5.87513 6.31014 6.47426 6.72931 7.31607 8.82062 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.015955 C = 0.011816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.352930 B = 1754.468917 C = 2369.051453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 C 0.139 3.861 4 H 0.035 0.965 5 C -0.526 4.526 6 H 0.044 0.956 7 C 0.032 3.968 8 N -0.936 5.936 9 Si 0.923 3.077 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.256 1.256 13 N -0.482 5.482 14 C 0.000 4.000 15 C -0.095 4.095 16 C -0.113 4.113 17 C -0.139 4.139 18 C 0.012 3.988 19 H 0.058 0.942 20 H 0.060 0.940 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.265 0.735 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 1.674 6.475 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.140 4.140 3 C 0.031 3.969 4 H 0.053 0.947 5 C -0.565 4.565 6 H 0.062 0.938 7 C -0.168 4.168 8 N -0.575 5.575 9 Si 0.749 3.251 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.180 1.180 13 N -0.204 5.204 14 C -0.130 4.130 15 C -0.114 4.114 16 C -0.151 4.151 17 C -0.196 4.196 18 C -0.117 4.117 19 H 0.077 0.923 20 H 0.079 0.921 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.898 1.614 6.376 10.278 hybrid contribution 1.177 0.315 -1.268 1.758 sum -6.721 1.928 5.108 8.659 Atomic orbital electron populations 1.21647 0.94946 1.00988 1.01539 1.21423 0.95977 0.96576 0.99990 1.20105 0.92276 0.93423 0.91098 0.94729 1.21555 0.92047 1.30228 1.12704 0.93837 1.25760 0.95444 0.95836 0.99766 1.70048 1.10389 1.42634 1.34446 0.86104 0.79385 0.79850 0.79783 1.19129 1.21431 1.18036 1.68775 1.44294 1.02898 1.04468 1.23791 0.98718 0.93287 0.97169 1.22866 0.97769 0.95469 0.95274 1.21437 0.95955 1.00421 0.97265 1.21668 1.01899 1.01590 0.94439 1.23848 0.97525 0.96629 0.93702 0.92254 0.92107 0.93997 0.93844 0.93581 0.92609 0.90577 0.92925 0.87611 0.94836 0.91971 0.91273 0.93072 0.92485 0.92099 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.79 71.98 0.70 -3.83 16 2 C -0.10 -4.19 5.46 30.60 0.17 -4.02 16 3 C 0.14 6.47 1.90 44.17 0.08 6.55 16 4 H 0.03 1.68 4.78 -2.39 -0.01 1.66 16 5 C -0.53 -28.71 6.39 25.60 0.16 -28.54 16 6 H 0.04 2.65 6.41 -2.91 -0.02 2.63 16 7 C 0.03 1.78 4.79 84.66 0.41 2.18 16 8 N -0.94 -56.56 13.96 21.45 0.30 -56.26 16 9 Si 0.92 44.06 26.92 68.60 1.85 45.90 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.26 -11.70 6.79 99.48 0.68 -11.03 16 13 N -0.48 -20.21 5.62 -886.20 -4.98 -25.19 16 14 C 0.00 -0.02 7.35 86.41 0.63 0.62 16 15 C -0.10 -3.30 3.82 -10.15 -0.04 -3.34 16 16 C -0.11 -3.76 5.77 30.59 0.18 -3.58 16 17 C -0.14 -3.61 9.91 71.98 0.71 -2.90 16 18 C 0.01 0.46 6.75 86.37 0.58 1.05 16 19 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.06 2.04 7.72 -2.39 -0.02 2.02 16 21 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.89 7.71 -2.39 -0.02 1.88 16 24 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.05 2.56 6.14 -2.38 -0.01 2.55 16 27 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 28 H 0.03 1.36 7.88 -2.39 -0.02 1.34 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 2.86 5.03 -2.39 -0.01 2.85 16 34 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -59.74 264.81 1.77 -57.97 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.01 Total: 13.39 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 3.59 Total: -35.81 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -4.68 Total: -81.45 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.85 Total: 45.90 kcal Total: -59.74 1.77 -57.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681512.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.964 kcal (2) G-P(sol) polarization free energy of solvation -59.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds