Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 113.38050 * 2 1 4 4 C 1.53513 * 114.17046 * 133.07877 * 2 1 3 5 5 N 1.47475 * 87.93127 * 139.67046 * 4 2 1 6 6 C 1.46901 * 111.00331 * 221.29783 * 5 4 2 7 7 C 1.52996 * 109.47195 * 170.00343 * 6 5 4 8 8 C 1.52997 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47288 * 59.99994 * 13 11 9 15 15 H 1.48503 * 109.47086 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46819 * 299.99648 * 13 11 9 17 17 C 1.47482 * 87.83773 * 332.99062 * 5 4 2 18 18 H 1.08995 * 109.46992 * 286.91755 * 1 2 3 19 19 H 1.08996 * 109.47048 * 46.92155 * 1 2 3 20 20 H 1.09000 * 109.47001 * 166.91722 * 1 2 3 21 21 H 1.08999 * 109.47101 * 193.07772 * 3 2 1 22 22 H 1.08999 * 109.47592 * 313.07860 * 3 2 1 23 23 H 1.09005 * 109.46696 * 73.08067 * 3 2 1 24 24 H 1.08997 * 113.47227 * 24.90693 * 4 2 1 25 25 H 1.08993 * 113.52923 * 254.45192 * 4 2 1 26 26 H 1.08992 * 109.46788 * 49.99974 * 6 5 4 27 27 H 1.08996 * 109.46661 * 290.00277 * 6 5 4 28 28 H 1.09001 * 109.47372 * 60.00105 * 7 6 5 29 29 H 1.09004 * 109.47108 * 299.99849 * 7 6 5 30 30 H 1.09001 * 109.46832 * 59.99979 * 8 7 6 31 31 H 1.09000 * 109.47611 * 300.00276 * 8 7 6 32 32 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 33 33 H 1.09008 * 113.47751 * 141.77604 * 17 5 4 34 34 H 1.08996 * 113.47416 * 272.23828 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1372 1.4044 0.0000 4 6 2.1586 -0.9566 1.0230 5 7 3.1619 -1.3059 0.0000 6 6 3.4331 -2.7496 0.0000 7 6 4.2789 -3.1096 -1.2231 8 6 4.5618 -4.6132 -1.2228 9 6 5.3944 -4.9679 -2.4279 10 1 5.6922 -4.1979 -3.1240 11 6 5.7758 -6.2755 -2.6416 12 7 5.4127 -7.2133 -1.7940 13 14 6.8084 -6.7151 -4.1349 14 1 8.0922 -5.9704 -4.0856 15 1 7.0830 -8.1745 -4.1346 16 1 6.0713 -6.3498 -5.3712 17 6 2.1586 -0.9566 -1.0230 18 1 -0.3633 0.2990 0.9832 19 1 -0.3633 0.7019 -0.7506 20 1 -0.3633 -1.0010 -0.2326 21 1 3.2002 1.3407 -0.2325 22 1 1.6372 2.0165 -0.7506 23 1 2.0069 1.8565 0.9833 24 1 1.5091 -1.7882 1.2959 25 1 2.5812 -0.4496 1.8904 26 1 2.4908 -3.2963 -0.0362 27 1 3.9741 -3.0176 0.9075 28 1 5.2212 -2.5629 -1.1869 29 1 3.7378 -2.8415 -2.1306 30 1 3.6197 -5.1602 -1.2587 31 1 5.1030 -4.8809 -0.3153 32 1 5.6814 -8.1332 -1.9442 33 1 2.5811 -0.4486 -1.8900 34 1 1.5092 -1.7883 -1.2960 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = 8.641756 kcal Electronic energy + Delta-G solvation = -12490.218763 eV Core-core repulsion = 10423.244102 eV Total energy + Delta-G solvation = -2066.974661 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.32438 -34.58686 -32.77121 -30.85765 -27.49755 -27.06460 -25.85672 -24.10307 -21.46423 -19.91978 -18.36133 -16.29034 -15.46167 -15.17692 -14.80667 -14.39403 -13.98936 -13.15978 -13.06731 -12.57169 -12.34797 -12.06342 -11.84824 -11.58383 -11.24882 -11.05711 -10.80092 -10.63309 -10.43736 -10.31278 -10.06533 -9.62542 -9.27019 -9.01561 -8.56258 -8.31270 -5.96700 -3.98804 3.35843 3.39633 3.42680 4.27439 4.32997 4.49612 4.81457 5.18496 5.23012 5.38856 5.44539 5.55531 5.59264 5.67686 5.77541 5.81654 5.87219 5.89616 6.03846 6.06128 6.15244 6.32675 6.40334 6.56866 6.77012 6.89398 7.19784 7.43179 7.71290 7.86534 8.03710 8.47273 9.08102 9.64988 11.14785 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.075698 B = 0.005966 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.801257 B = 4692.051693 C = 4803.041582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 C -0.119 4.119 4 C 0.003 3.997 5 N -0.471 5.471 6 C 0.021 3.979 7 C -0.102 4.102 8 C 0.022 3.978 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.008 3.992 18 H 0.056 0.944 19 H 0.057 0.943 20 H 0.055 0.945 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.080 0.920 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 13.380 4.026 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C -0.176 4.176 4 C -0.126 4.126 5 N -0.192 5.192 6 C -0.107 4.107 7 C -0.140 4.140 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.121 4.121 18 H 0.075 0.925 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.971 13.458 4.065 16.161 hybrid contribution -0.165 -1.015 -0.771 1.286 sum -8.135 12.443 3.293 15.227 Atomic orbital electron populations 1.21719 0.94067 1.01849 1.01673 1.22041 0.94823 0.95530 0.97515 1.21453 1.01433 0.93485 1.01212 1.23912 0.94088 0.98022 0.96615 1.68918 1.28570 1.18166 1.03570 1.22813 0.99564 0.87103 1.01241 1.21559 0.98123 0.99990 0.94353 1.19075 0.96574 0.88831 0.97092 1.21224 1.32555 0.93173 1.08772 0.92750 1.25027 0.96301 0.96587 0.96575 1.69964 1.46255 1.01055 1.36408 0.86650 0.80845 0.77186 0.83278 1.20217 1.21291 1.20266 1.23911 0.93804 0.97816 0.96542 0.92488 0.92431 0.92575 0.91402 0.92758 0.92716 0.91702 0.90305 0.94675 0.91122 0.92711 0.93640 0.96879 0.96619 0.93000 0.90122 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.30 37.16 0.35 -0.97 16 2 C -0.10 -1.15 1.53 -153.97 -0.24 -1.38 16 3 C -0.12 -1.25 9.22 37.16 0.34 -0.91 16 4 C 0.00 0.04 6.87 -7.55 -0.05 -0.02 16 5 N -0.47 -7.58 6.22 -244.60 -1.52 -9.10 16 6 C 0.02 0.39 4.82 -3.83 -0.02 0.37 16 7 C -0.10 -2.25 5.26 -26.73 -0.14 -2.39 16 8 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 9 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 13 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.01 0.12 6.10 -7.55 -0.05 0.07 16 18 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 19 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 20 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 21 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.83 7.73 -51.93 -0.40 0.43 16 25 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 26 H 0.03 0.64 7.56 -51.93 -0.39 0.25 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.99 7.67 -51.93 -0.40 0.59 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.08 1.15 8.12 -51.92 -0.42 0.73 16 34 H 0.07 0.98 7.49 -51.93 -0.39 0.60 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -30.47 276.69 -8.16 -38.62 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -6.17 Total: -5.24 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.35 Total: -18.73 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.78 Total: -35.92 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.47 -8.16 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.267 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds